Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09739

Metabolite ID
P09739
Deionized mass
424.1229 Da
Average m/z
425.1277
Average RT
10.2453
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 3Chr03:5113019–5121557 (+)7.163e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.242e-11
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 3Chr20:34757381–34771672 (+)1.04e-11
Glyma.12G059300 hypothetical protein NA 2Chr12:4289989–4292215 (-)2.608e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)9.504e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.77e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)4.452e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.738e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.273e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.775e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)9.938e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)4.589e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.015e-14
Glyma.04G235400 hypothetical protein AT3G49260:iqd21:IQ-domain 21 1Chr04:50351726–50356449 (-)7.358e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)5.777e-13
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)5.777e-13
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)5.777e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.197e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.197e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.197e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.44e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.127e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.758e-16
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.765e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.149e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.149e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.373e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.66e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.043e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.514e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.514e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.514e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.514e-13
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)1.809e-11
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)1.809e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.785e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.22e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)1.945e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.342e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)1.82e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.362e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.362e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.939e-11
Glyma.14G083200 hypothetical protein NA 1Chr14:7249145–7256947 (-)9.995e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.28e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.143e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.28e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.28e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.679e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.242e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.242e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.242e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.242e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.056e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.578e-12
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)4.374e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.856e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)4.582e-12
Glyma.20G105400 hypothetical protein AT2G17010:AT2G17010:Mechanosensitive ion channel family protein 1Chr20:34796301–34808587 (+)1.232e-11
Glyma.20G105600 hypothetical protein AT2G17033:AT2G17033:pentatricopeptide (PPR) repeat-containing protein 1Chr20:34818550–34820435 (-)1.232e-11