Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09654

Metabolite ID
P09654
Deionized mass
254.0901 Da
Average m/z
255.0955
Average RT
10.2169
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
141
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

141 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.815e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.588e-18
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.364e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)2.926e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)7.55e-14
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)7.134e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)3.359e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.988e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.446e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.901e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.901e-14
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)6.245e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.436e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.946e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.43e-11
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)2.103e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.036e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)4.957e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.333e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)7.134e-11
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)7.134e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.752e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.06e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.892e-12
Glyma.05G029900 hypothetical protein AT5G62730:AT5G62730:Major facilitator superfamily protein 1Chr05:2565716–2569741 (-)9.972e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.114e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)8.513e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.709e-18
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.393e-18
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.393e-18
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.542e-19
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.462e-19
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.462e-19
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.462e-19
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.575e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.768e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.963e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)6.911e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.323e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.929e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.665e-16
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.62e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.342e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.342e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.342e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.217e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.217e-16
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.362e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.029e-12
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)8.884e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)5.403e-11
Glyma.06G260200 hypothetical protein AT1G60690:AT1G60690:NAD(P)-linked oxidoreductase superfamily protein__AT1G60710:ATB2:NAD(P)-linked oxidoreductase super… 1Chr06:44529441–44533552 (-)6.042e-11
Glyma.06G260300 hypothetical protein AT1G60730:AT1G60730:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:44535490–44539648 (-)6.042e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.364e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.364e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.993e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.454e-18
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.154e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.227e-14
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)1.7e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)9.982e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.117e-15
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.792e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.251e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.661e-14
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)4.652e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)8.873e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.519e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.041e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.041e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.041e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.041e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.139e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.551e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.319e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.047e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.046e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.586e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.587e-16
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)8.156e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.79e-12
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)5.167e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)7.311e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.446e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.9e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.9e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.901e-14
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.739e-13
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)6.245e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.259e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.645e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.639e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.621e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.989e-14
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)8.838e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.946e-14
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)2.368e-11
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)6.814e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.43e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.663e-11
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)1.389e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)5.683e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.59e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.139e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.59e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.59e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.628e-11
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)4.686e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.481e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)3.725e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.356e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.351e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)8.046e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.935e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)1.935e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.838e-16
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.547e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)5.224e-12
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 1Chr17:34916813–34922875 (+)5.814e-12
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)6.344e-12
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)1.246e-13
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)4.279e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.733e-14
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.036e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.69e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)6.026e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)6.026e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)5.635e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.281e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.629e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)9.905e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.286e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.286e-15
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)9.059e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.496e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.026e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.792e-14
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.636e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.193e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.184e-11
Glyma.20G114400 hypothetical protein AT1G68585:AT1G68585:uncharacterized protein 1Chr20:35614355–35616709 (-)4.781e-11