Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09641

Metabolite ID
P09641
Deionized mass
444.6691 Da
Average m/z
445.6790
Average RT
10.2134
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.814e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.499e-14
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)6.18e-12
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)4.902e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.853e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)8.2e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.853e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.809e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.374e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.151e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.407e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.625e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)4.606e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.94e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.045e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.496e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)5.263e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)3.895e-11
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 1Chr09:6509441–6524102 (+)5.056e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.729e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.021e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.73e-15
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)9.455e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.307e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)9.301e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.402e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.402e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.064e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.776e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.414e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.889e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.28e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.867e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.692e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.826e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.692e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.692e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.986e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.91e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.91e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)7.878e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.425e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.381e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)8.989e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)6.184e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.256e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.025e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.025e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)6.18e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.219e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.448e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)5.968e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)3.079e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.028e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.814e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.232e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.098e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.309e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.937e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.936e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.921e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.445e-11