Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09564

Metabolite ID
P09564
Deionized mass
253.1160 Da
Average m/z
254.1232
Average RT
10.1850
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
128
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

128 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.464e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.113e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)2.438e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)2.161e-18
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.143e-16
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.408e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.439e-16
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.749e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.749e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)8.502e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.217e-13
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)8.995e-14
Glyma.16G138800 hypothetical protein NA 2Chr16:29609432–29615000 (+)4.377e-17
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 2Chr16:30086178–30091466 (-)1.21e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.229e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)3.4e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.965e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)4.246e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)3.236e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.158e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.158e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)1.626e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.391e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.011e-12
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)1.156e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)1.156e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)1.156e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.282e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.671e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.436e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.578e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.578e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.401e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.219e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.219e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.219e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.982e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.126e-15
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)3.654e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.915e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.915e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.915e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.915e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.744e-24
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.792e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.324e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.181e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.181e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.417e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)9.391e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.307e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.307e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.384e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.211e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.211e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)4.435e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)4.435e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)8.782e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.362e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)7.157e-11
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)3.884e-11
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)8.18e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)6.075e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.134e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.305e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.048e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.105e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.26e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.26e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.26e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.26e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.38e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.062e-14
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.062e-14
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.062e-14
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)4.974e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.161e-18
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)1.343e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)1.738e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.364e-17
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.439e-16
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.454e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.824e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.535e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.535e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.749e-12
Glyma.13G166300 hypothetical protein NA 1Chr13:28110251–28113628 (-)7.501e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.744e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.502e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.006e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.802e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.006e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.006e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.703e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)7.155e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)5.795e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.673e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.217e-13
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)1.003e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)8.237e-15
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)9.34e-12
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)9.34e-12
Glyma.16G138300 hypothetical protein AT4G36550:AT4G36550:ARM repeat superfamily protein 1Chr16:29532421–29538165 (-)2.621e-12
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)2.476e-14
Glyma.16G139400 hypothetical protein AT3G50870:MNP:GATA type zinc finger transcription factor family protein 1Chr16:29672011–29674023 (+)3.842e-11
Glyma.16G140700 hypothetical protein NA 1Chr16:29846716–29852078 (-)1.313e-12
Glyma.16G140800 hypothetical protein AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein 1Chr16:29854784–29858843 (-)3.246e-15
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)5.104e-21
Glyma.16G141500 bZIP117 AT4G36730:GBF1:G-box binding factor 1 1Chr16:29960697–29967081 (-)7.668e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)5.104e-21
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 1Chr16:30388030–30390647 (-)8.185e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.043e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.635e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)4.461e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.635e-14
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.4e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.12e-13
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)7.434e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.17e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.065e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.965e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.03e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.051e-11
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)2.134e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.661e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.661e-11
Glyma.20G198400 hypothetical protein NA 1Chr20:43601702–43633244 (+)3.815e-11
Glyma.20G198600 hypothetical protein AT5G51150:AT5G51150:Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 1Chr20:43634710–43639892 (-)3.815e-11