Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09479

Metabolite ID
P09479
Deionized mass
376.0382 Da
Average m/z
377.0478
Average RT
10.1553
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)9.608e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.045e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)4.005e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.465e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.487e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)2.345e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.21e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)6.547e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.591e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.045e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.91e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.971e-11
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)9.605e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.92e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.33e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.701e-15
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.397e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.397e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.035e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.397e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.397e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.035e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.837e-13
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)4.947e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.831e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.989e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.312e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.312e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.312e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.312e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.23e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.293e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.293e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.617e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.269e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.436e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.436e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.436e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.866e-12
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)1.649e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)8.531e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.531e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.859e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.809e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.859e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.859e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.608e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.692e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.005e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.005e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.005e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.005e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)9.157e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.265e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.142e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.487e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.487e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.391e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.919e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.919e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.098e-11