Overview Annotation GWAS Evidence Associated genes

P09463

Metabolite ID
P09463
Deionized mass
394.1400 Da
Average m/z
395.1477
Average RT
10.1499
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
136
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

136 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.498e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.362e-12
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)4.894e-12
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)6.438e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.155e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)3.939e-14
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)3.521e-11
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 2Chr02:5577271–5582873 (-)3.536e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)6.839e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.824e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.824e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.824e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.757e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)3.587e-14
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)3.037e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.854e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.441e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.322e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.274e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.222e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)2.807e-18
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)2.807e-18
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.362e-12
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 2Chr19:38632803–38635633 (+)2.475e-12
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)5.416e-11
Glyma.01G034800 hypothetical protein NA 1Chr01:3605528–3607302 (-)4.15e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)4.894e-12
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)7.404e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)5.272e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.885e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)4.383e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.169e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.932e-11
Glyma.01G230400 hypothetical protein AT2G40935:AT2G40935:PLAC8 family protein 1Chr01:55782953–55786502 (+)3.568e-11
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)5.198e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)6.803e-15
Glyma.01G234300 hypothetical protein AT5G16680:AT5G16680:RING/FYVE/PHD zinc finger superfamily protein 1Chr01:56040889–56049889 (-)1.274e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.012e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.345e-14
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)2.194e-14
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)4.668e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)4.163e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.607e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.345e-13
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)8.583e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.419e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.075e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.439e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.321e-22
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.515e-16
Glyma.05G239000 hypothetical protein NA 1Chr05:41489721–41491777 (+)5.38e-11
Glyma.05G242600 hypothetical protein AT1G45688:AT1G45688:uncharacterized protein 1Chr05:41753113–41754953 (-)6.784e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.356e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.356e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.41e-12
Glyma.06G126700 hypothetical protein AT5G53120:SPDS3:spermidine synthase 3 1Chr06:10384771–10389578 (-)1.651e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.714e-13
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)4.51e-18
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)4.51e-18
Glyma.06G132300 hypothetical protein AT5G24350:AT5G24350:neuroblastoma-amplified sequence protein 1Chr06:10895966–10910088 (+)2.281e-12
Glyma.06G132500 hypothetical protein AT4G27720:AT4G27720:Major facilitator superfamily protein 1Chr06:10914956–10919016 (-)5.551e-12
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)7.749e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.574e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.188e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.307e-12
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)4.644e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.604e-12
Glyma.08G031900 hypothetical protein AT4G29230:NAC075:NAC domain containing protein 75 1Chr08:2547941–2553643 (+)3.034e-15
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.392e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.355e-11
Glyma.08G215400 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:17463087–17467014 (+)5.991e-12
Glyma.08G215500 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:17476921–17480079 (+)5.991e-12
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)1.113e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)6.811e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)6.811e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.241e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.565e-20
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.104e-16
Glyma.09G209200 hypothetical protein AT1G32160:AT1G32160:beta-casein (DUF760) 1Chr09:43361634–43365478 (-)5.14e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)8.539e-12
Glyma.09G210800 hypothetical protein AT1G32050:SCAMP5:SCAMP family protein 1Chr09:43476243–43482337 (+)8.024e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)5.09e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.93e-14
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)4.083e-14
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)2.432e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.295e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.579e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.377e-14
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.824e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.824e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.824e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.824e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.824e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)9.24e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.496e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.496e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.496e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.496e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.159e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.349e-12
Glyma.13G053000 hypothetical protein AT3G02230:RGP1:reversibly glycosylated polypeptide 1 1Chr13:15046821–15050021 (+)9.36e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.155e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.796e-12
Glyma.13G238400 hypothetical protein AT3G46930:AT3G46930:Protein kinase superfamily protein__AT5G58950:AT5G58950:Protein kinase superfamily protein 1Chr13:34872388–34881743 (-)3.084e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.926e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.09e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.09e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.09e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.208e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.48e-13
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)4.063e-14
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.733e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.936e-13
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)1.743e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.052e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)4.421e-11
Glyma.16G178800 hypothetical protein NA 1Chr16:33950003–33953968 (-)2.947e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.419e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.687e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.687e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)5.805e-12
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)5.805e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.322e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.758e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.322e-13
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)2.199e-12
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)9.686e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.614e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)9.237e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)5.991e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.274e-14
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)4.45e-15
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.263e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.742e-11
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)3.191e-11
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)5.416e-11