Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09080

Metabolite ID
P09080
Deionized mass
198.0872 Da
Average m/z
199.0942
Average RT
10.0215
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)3.453e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.563e-11
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)8.28e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)1.395e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)9.382e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.297e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.015e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.454e-12
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)5.767e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.42e-11
Glyma.02G121500 hypothetical protein NA 1Chr02:12065640–12082937 (+)5.151e-11
Glyma.02G121600 hypothetical protein AT1G26310:CAL:K-box region and MADS-box transcription factor family protein 1Chr02:12084714–12089043 (+)5.151e-11
Glyma.02G125400 hypothetical protein AT1G68910:WIT2:WPP domain-interacting protein 2 1Chr02:12529368–12536281 (+)8.341e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)2.392e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.717e-15
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)3.637e-13
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)3.637e-13
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)1.258e-13
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)2.108e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.005e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)6.338e-13
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.54e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.693e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.163e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.362e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.362e-11
Glyma.06G285000 hypothetical protein AT2G42390:AT2G42390:kinase C substrate, heavy chain-like protein 1Chr06:47349868–47363027 (-)9.464e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)6.457e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.563e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.563e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.874e-14
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.382e-12
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)4.672e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.015e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.015e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.015e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.015e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)5.819e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.012e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.505e-12
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)8.28e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)8.28e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)9.963e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)6.243e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.288e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.288e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.16e-11
Glyma.10G186500 PT7 NA 1Chr10:41946209–41950274 (-)4.944e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.047e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.67e-16
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.653e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.653e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.307e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.963e-11
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)2.96e-14
Glyma.14G198600 hypothetical protein NA 1Chr14:46360801–46362778 (+)9.385e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.988e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)7.305e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.7e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)6.276e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.282e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)3.489e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)3.489e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.142e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)7.61e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.465e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.465e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.229e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.288e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.662e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.827e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.386e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.623e-12