Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09068

Metabolite ID
P09068
Deionized mass
244.0933 Da
Average m/z
245.0992
Average RT
10.0183
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G060000 hypothetical protein NA 5Chr09:5548206–5554279 (-)4.354e-12
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 4Chr09:4583416–4589291 (-)2.6e-15
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)9.514e-19
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 3Chr09:5571201–5579976 (-)4.354e-12
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 2Chr09:5513108–5520158 (+)4.354e-12
Glyma.09G060100 hypothetical protein AT5G57160:ATLIG4:DNA ligase IV 2Chr09:5561072–5570789 (+)4.354e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.257e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)9.974e-11
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)7.283e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.015e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)5.618e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.743e-13
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)1.257e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.476e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.801e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.801e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.282e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.812e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.812e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.812e-16
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.755e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)3.048e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.073e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.057e-13
Glyma.09G050800 AAH2 AT4G20070:AAH:allantoate amidohydrolase 1Chr09:4413615–4418223 (-)3.263e-14
Glyma.09G051100 hypothetical protein NA 1Chr09:4454515–4461881 (+)5.107e-14
Glyma.09G051500 hypothetical protein AT3G06960:PDE320:pigment defective 320 1Chr09:4488096–4493102 (-)5.107e-14
Glyma.09G052100 hypothetical protein AT3G22230:AT3G22230:Ribosomal L27e protein family 1Chr09:4536612–4538089 (+)7.718e-15
Glyma.09G052500 hypothetical protein AT3G19760:EIF4A-III:eukaryotic initiation factor 4A-III__AT1G51380:AT1G51380:DEA(D/H)-box RNA helicase family protein 1Chr09:4602466–4606457 (-)3.604e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.394e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.901e-13
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.901e-13
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)1.066e-11
Glyma.09G059900 hypothetical protein AT4G26000:PEP:RNA-binding KH domain-containing protein 1Chr09:5540197–5546848 (+)4.354e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.977e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)4.982e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.549e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.681e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.033e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.033e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.033e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.221e-14
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)4.404e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.665e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.931e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.967e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)7.306e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.87e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)2.712e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.961e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.961e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.772e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.772e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.149e-12