Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09042

Metabolite ID
P09042
Deionized mass
736.2692 Da
Average m/z
737.2706
Average RT
10.0096
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
114
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

114 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.401e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.737e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.324e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.081e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)3.525e-17
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)3.502e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.502e-15
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)9.77e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)9.77e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)9.768e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.07e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)8.614e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.936e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.91e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.118e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.118e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.001e-12
Glyma.17G215200 hypothetical protein NA 2Chr17:36125880–36142936 (+)2.682e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.737e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)1.788e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)5.011e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)6.378e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.723e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.415e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.536e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)7.132e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.06e-16
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)2.041e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.852e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.33e-18
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.525e-17
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.08e-18
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.092e-18
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.092e-18
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.092e-18
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)6.367e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.942e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.108e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.388e-16
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.722e-15
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)6.268e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.345e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.194e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.194e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.194e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.379e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.379e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.982e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.502e-15
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.502e-15
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.502e-15
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.718e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.578e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.788e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)9.77e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)9.77e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)9.77e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)9.77e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)9.77e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)4.434e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)8.873e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.682e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.682e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.505e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.304e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.304e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.417e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.868e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.214e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.214e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.91e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.173e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.173e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.118e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.917e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.917e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.917e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.507e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.775e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.904e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.001e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.738e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.037e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.108e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.053e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)8.367e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)3.594e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.282e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.956e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)6.638e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.041e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)6.219e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.081e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.16e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.16e-13
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)3.82e-13
Glyma.17G212100 hypothetical protein NA 1Chr17:35010757–35014587 (+)2.682e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.682e-11
Glyma.17G212700 hypothetical protein NA 1Chr17:35238269–35239648 (+)2.626e-11
Glyma.17G213300 hypothetical protein NA 1Chr17:35589559–35592664 (+)2.682e-11
Glyma.17G213600 hypothetical protein AT4G32060:AT4G32060:calcium-binding EF hand family protein 1Chr17:35740625–35746554 (-)2.682e-11
Glyma.17G213700 hypothetical protein AT5G11090:AT5G11090:serine-rich protein-like protein 1Chr17:35767502–35768989 (-)2.682e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)2.682e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.682e-11
Glyma.18G050000 hypothetical protein NA 1Chr18:4309070–4316534 (-)9.737e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.805e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.805e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)3.385e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)2.823e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.285e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.658e-12
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)8.859e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6.159e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)5.565e-11