Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08647

Metabolite ID
P08647
Deionized mass
173.0699 Da
Average m/z
174.0765
Average RT
9.8708
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
121
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

121 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.132e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)6.034e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.471e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.347e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.569e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.608e-14
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)2.918e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.179e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.087e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.087e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.278e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.168e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.521e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.132e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.529e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)9.601e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)4.966e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)9.331e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.343e-14
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)2.596e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.793e-12
Glyma.04G097900 hypothetical protein AT5G65380:AT5G65380:MATE efflux family protein 1Chr04:8857667–8865249 (+)6.614e-11
Glyma.04G098100 hypothetical protein AT2G34990:AT2G34990:RING/U-box superfamily protein__AT1G72200:AT1G72200:RING/U-box superfamily protein 1Chr04:8887523–8888545 (-)6.326e-11
Glyma.04G098300 hypothetical protein NA 1Chr04:8910522–8912389 (-)6.326e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.262e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.137e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.562e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.36e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.36e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.107e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.535e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.535e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.535e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.855e-17
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.413e-21
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.396e-20
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.539e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.344e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.098e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.929e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)4.366e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)6.975e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)9.99e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)9.99e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)9.99e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)4.334e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)9.39e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.393e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)9.39e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)9.39e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.393e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.639e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.8e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.799e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.8e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.347e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.347e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.347e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.347e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)3.782e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.687e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.526e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.947e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.523e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)3.072e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)4.12e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.354e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)9.81e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)7.197e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.189e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.189e-15
Glyma.12G109600 hypothetical protein AT4G03420:AT4G03420: 1Chr12:10403574–10408026 (+)2.655e-11
Glyma.12G109700 hypothetical protein AT1G03620:AT1G03620:ELMO/CED-12 family protein 1Chr12:10419034–10424716 (-)2.655e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.814e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.814e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.359e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.359e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.493e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.103e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.608e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.581e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.576e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)7.297e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.346e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.179e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.256e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.257e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.087e-13
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)9.133e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.042e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)7.321e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)7.321e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)7.321e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.264e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.909e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.168e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.521e-13
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)3.987e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.338e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.38e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.108e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.674e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)2.707e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.006e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.681e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.681e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.81e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.81e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)5.338e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.382e-12
Glyma.19G193500 hypothetical protein NA 1Chr19:45118043–45121712 (-)4.284e-11
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)7.093e-13
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)7.093e-13
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)7.093e-13
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)3.577e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.98e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.333e-13
Glyma.20G108600 hypothetical protein NA 1Chr20:35099991–35104464 (+)7.915e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)7.981e-11
Glyma.20G109100 hypothetical protein AT1G14590:AT1G14590:Nucleotide-diphospho-sugar transferase family protein 1Chr20:35166747–35171332 (+)7.981e-11
Glyma.20G123100 hypothetical protein AT2G01110:APG2:Sec-independent periplasmic protein translocase 1Chr20:36592639–36595961 (+)8.052e-11