Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08253

Metabolite ID
P08253
Deionized mass
353.1426 Da
Average m/z
354.1514
Average RT
9.7296
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
126
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

126 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G210200 hypothetical protein NA 5Chr16:36933402–36938940 (+)1.857e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.383e-20
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 3Chr04:7187985–7192897 (+)4.229e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.001e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)2.383e-14
Glyma.03G022900 hypothetical protein NA 2Chr03:2409690–2420328 (-)4.623e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.681e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)9.359e-19
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)8.681e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.175e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.041e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.041e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.977e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.035e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.944e-12
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)2.129e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.478e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)7.249e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.783e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.783e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.973e-16
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.596e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.608e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.816e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)4.628e-12
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)8.98e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.065e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.724e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.471e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.105e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.105e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.105e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.289e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.248e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)7.232e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.806e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)2.338e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.876e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.876e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.876e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.876e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.626e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.296e-16
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.468e-17
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.539e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.539e-12
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)8.48e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.215e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.215e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.852e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.026e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)3.407e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.792e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.514e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)9.135e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.514e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.514e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)9.135e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.124e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.001e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.001e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)7.024e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.697e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.697e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.169e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)2.637e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)9.775e-13
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)2.289e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)1.743e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.336e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)6.65e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.195e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.288e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.077e-14
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)7.832e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)4.429e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)7.227e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.904e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.831e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)6.984e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)1.139e-11
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)5.671e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.637e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.413e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.069e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.003e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.004e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.359e-19
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.175e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.908e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.908e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.041e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)4.166e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.64e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.035e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.329e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.669e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.823e-17
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.875e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)2.523e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)2.523e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.591e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)8.689e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)8.689e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.592e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.883e-12
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)3.914e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.814e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)3.885e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.857e-15
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.383e-14
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)5.717e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)7.379e-13
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)9.166e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)6.676e-14
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)9.166e-12
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)9.166e-12
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)1.335e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.011e-14
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)2.333e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.974e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.974e-13
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)1.321e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)1.321e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.419e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)1.596e-11