Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08054

Metabolite ID
P08054
Deionized mass
434.1390 Da
Average m/z
435.1468
Average RT
9.6606
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 6Chr08:11525692–11536927 (+)7.131e-15
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)6.348e-13
Glyma.18G195500 hypothetical protein NA 4Chr18:46967195–46981775 (+)6.029e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)4.238e-13
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)7.167e-11
Glyma.05G142000 hypothetical protein NA 2Chr05:33530449–33539474 (-)7.898e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.402e-11
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 2Chr08:11518864–11523442 (-)3.623e-15
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)3.919e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)7.167e-11
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)6.27e-13
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)8.37e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)8.37e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)8.37e-12
Glyma.04G237700 hypothetical protein NA 1Chr04:50614236–50619957 (+)6.018e-11
Glyma.05G141700 hypothetical protein NA 1Chr05:33492470–33495095 (-)4.938e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.11e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.42e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.713e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.7e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)8.749e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.402e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.402e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.402e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.402e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)3.525e-12
Glyma.08G150300 hypothetical protein NA 1Chr08:11550134–11555581 (+)1.618e-12
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)1.161e-12
Glyma.08G151100 hypothetical protein NA 1Chr08:11627319–11628691 (+)3.265e-11
Glyma.10G005300 hypothetical protein AT5G46050:PTR3:peptide transporter 3 1Chr10:535249–541722 (+)2.192e-12
Glyma.10G005400 hypothetical protein AT5G46040:AT5G46040:Major facilitator superfamily protein 1Chr10:545269–550554 (+)2.192e-12
Glyma.10G006000 hypothetical protein NA 1Chr10:596042–600044 (-)2.192e-12
Glyma.10G006500 hypothetical protein AT5G43330:c-NAD-MDH2:Lactate/malate dehydrogenase family protein 1Chr10:633423–637181 (+)2.192e-12
Glyma.10G039900 hypothetical protein NA 1Chr10:3528125–3529563 (-)9.659e-11
Glyma.10G040100 hypothetical protein AT5G43990:SUVR2:SET-domain containing protein lysine methyltransferase family protein 1Chr10:3534381–3541727 (-)9.659e-11
Glyma.10G041000 hypothetical protein AT5G43940:HOT5:GroES-like zinc-binding dehydrogenase family protein 1Chr10:3597307–3601274 (-)9.065e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.29e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.29e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.29e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.29e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.582e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.535e-15
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.535e-15
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.535e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.781e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.781e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.621e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.971e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.971e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.79e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.486e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.254e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.486e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.486e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.495e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)6.348e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)8.97e-13
Glyma.16G117300 hypothetical protein NA 1Chr16:26226934–26227350 (+)9.953e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.964e-12
Glyma.16G141500 bZIP117 AT4G36730:GBF1:G-box binding factor 1 1Chr16:29960697–29967081 (-)1.59e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)2.839e-13
Glyma.18G195000 hypothetical protein NA 1Chr18:46858462–46861415 (+)4.001e-11
Glyma.18G195900 accA-2 AT2G38040:CAC3:acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 1Chr18:47054765–47060075 (+)1.448e-11