Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08052

Metabolite ID
P08052
Deionized mass
227.0777 Da
Average m/z
228.0855
Average RT
9.6601
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)8.766e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.34e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)7.47e-17
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)5.112e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.186e-13
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)6.017e-13
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)5.425e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.34e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.992e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.973e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.245e-14
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)7.822e-11
Glyma.03G173600 hypothetical protein AT3G53570:FC1:serine/threonine-protein kinase AFC1 1Chr03:38756369–38760896 (+)5.452e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.751e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.602e-11
Glyma.05G123300 hypothetical protein NA 1Chr05:31696132–31700404 (+)8.565e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.593e-17
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)4.215e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.087e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.279e-17
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.47e-17
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.99e-17
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.27e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.27e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.27e-16
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.156e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)9.952e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.69e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.782e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.492e-13
Glyma.11G026700 hypothetical protein AT1G63020:NRPD1A:nuclear RNA polymerase D1A 1Chr11:1908384–1922893 (+)4.304e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.362e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.362e-12
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.733e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.207e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.207e-14
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.11e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.11e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.11e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.209e-13
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)1.144e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.81e-16
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.134e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.644e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)2.77e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.749e-12
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)1.23e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.754e-11
Glyma.18G050000 hypothetical protein NA 1Chr18:4309070–4316534 (-)2.571e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)3.868e-12
Glyma.18G052300 hypothetical protein NA 1Chr18:4521958–4525815 (+)2.126e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)6.22e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.55e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.55e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.431e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)7.353e-12