Overview Annotation GWAS Evidence Associated genes

P08000

Metabolite ID
P08000
Deionized mass
280.1431 Da
Average m/z
281.1482
Average RT
9.6458
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
12
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

12 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G044000 hypothetical protein AT4G34450:AT4G34450:coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP 1Chr12:3189194–3197228 (-)1.115e-11
Glyma.12G044100 hypothetical protein AT1G49300:RABG3E:RAB GTPase homolog G3E__AT3G18820:RAB7B:RAB GTPase homolog G3F 1Chr12:3200573–3204146 (+)1.115e-11
Glyma.12G044400 hypothetical protein NA 1Chr12:3223730–3224902 (-)1.115e-11
Glyma.12G044600 hypothetical protein NA 1Chr12:3238665–3241765 (+)1.115e-11
Glyma.12G045700 hypothetical protein AT3G18850:LPAT5:lysophosphatidyl acyltransferase 5 1Chr12:3315565–3319641 (-)4.892e-17
Glyma.12G045800 hypothetical protein AT3G18860:AT3G18860:transducin family protein / WD-40 repeat family protein 1Chr12:3323965–3336181 (+)4.892e-17
Glyma.12G046000 hypothetical protein AT4G34350:HDR:4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1Chr12:3342101–3345568 (-)5.34e-12
Glyma.12G046200 hypothetical protein AT3G18890:Tic62:NAD(P)-binding Rossmann-fold superfamily protein 1Chr12:3354093–3359660 (+)4.892e-17
Glyma.12G046400 hypothetical protein AT2G16090:ARI2:RING/U-box superfamily protein__AT4G34370:ARI1:RING/U-box superfamily protein__AT3G27720:ARI4:IBR domain… 1Chr12:3365588–3369352 (+)4.892e-17
Glyma.12G046500 hypothetical protein NA 1Chr12:3378854–3384275 (+)4.892e-17
Glyma.12G046700 hypothetical protein AT2G16070:PDV2:plastid division2 1Chr12:3390831–3393790 (+)8.027e-11
Glyma.14G197300 hypothetical protein AT1G07090:LSH6: 1Chr14:46239260–46240644 (+)9.587e-13