Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07959

Metabolite ID
P07959
Deionized mass
233.1433 Da
Average m/z
234.1495
Average RT
9.6365
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)4.144e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.271e-12
Glyma.12G059300 hypothetical protein NA 2Chr12:4289989–4292215 (-)7.3e-14
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.825e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)7.741e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.054e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.915e-12
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)4.103e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.767e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.784e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.658e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.55e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)7.211e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)9.754e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)9.754e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.726e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.158e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.121e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)8.386e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.99e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.99e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.99e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.99e-12
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)5.743e-11
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)5.743e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.86e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)2.627e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.856e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.856e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.448e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.84e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.189e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.84e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.84e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.157e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.966e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)7.722e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.329e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.058e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.058e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)1.25e-11
Glyma.18G197500 hypothetical protein NA 1Chr18:47377826–47380850 (+)8.691e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.914e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.662e-11