Overview Annotation GWAS Evidence Associated genes

P07929

Metabolite ID
P07929
Deionized mass
252.1271 Da
Average m/z
253.1325
Average RT
9.6256
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
141
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

141 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.656e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)6.972e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)8.367e-21
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.672e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)6.009e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)6.67e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.226e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)4.873e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.824e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.824e-13
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 2Chr14:46291986–46298337 (+)6.419e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)8.346e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.053e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.656e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.992e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.046e-12
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)1.585e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)1.664e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)3.111e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.86e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)8.69e-14
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.169e-15
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)9.984e-12
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)1.166e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)1.168e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)4.599e-14
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)6.426e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)6.709e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.951e-11
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)7.402e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)7.402e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.763e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.36e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.853e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.147e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)1.903e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.254e-13
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)9.629e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)9.629e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)9.629e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)9.629e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.474e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.889e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.983e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.445e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.445e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.445e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)9.914e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)9.914e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.222e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.222e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)1.093e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.624e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)7.405e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.283e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.283e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.283e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.144e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.965e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.965e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)6.546e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.16e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.381e-17
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)2.085e-12
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)4.25e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.349e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.722e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.159e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.652e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.804e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.453e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.453e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.453e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.453e-12
Glyma.11G094800 hypothetical protein NA 1Chr11:7199274–7201137 (+)6.174e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.368e-18
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)6.623e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.035e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.035e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.035e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.057e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.057e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.53e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.53e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.731e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)7.109e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.432e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.782e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.782e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.222e-12
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)4.558e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)4.558e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)9.255e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)4.471e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.672e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.615e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.007e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.006e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.824e-13
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)5.581e-11
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)3.965e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.286e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)9.584e-12
Glyma.14G197800 hypothetical protein AT2G30120:AT2G30120:protein FLC EXPRESSOR 1Chr14:46303686–46308920 (+)3.951e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)6.419e-13
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)4.303e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.346e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.599e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.637e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.108e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.931e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.108e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.108e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.137e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.13e-15
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.274e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.053e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.591e-12
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)3.032e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.304e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.506e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)1.536e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)1.855e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)7.818e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.304e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.304e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.624e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.624e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.986e-11
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)5.749e-12
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)5.749e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.637e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.353e-11
Glyma.19G006200 hypothetical protein NA 1Chr19:590763–595425 (+)7.348e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.975e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.975e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.845e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.598e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)8.649e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)7.38e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)7.195e-11