Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07892

Metabolite ID
P07892
Deionized mass
138.0308 Da
Average m/z
139.0378
Average RT
9.6121
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
107
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

107 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.145e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.145e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.145e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.464e-12
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)1.571e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)2.152e-13
Glyma.15G152400 hypothetical protein NA 2Chr15:12641790–12646649 (+)7.698e-13
Glyma.16G050900 COL16 NA 2Chr16:4874634–4878624 (+)7.838e-15
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.906e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.906e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)1.117e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.212e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.321e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.982e-14
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)1.016e-15
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.748e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.112e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)4.518e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)4.518e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)4.345e-13
Glyma.07G087500 hypothetical protein AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr07:8093667–8100429 (+)3.575e-12
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)2.018e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.743e-15
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)2.087e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.805e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.279e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.298e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.482e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.879e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.145e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.145e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.145e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.804e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.145e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.145e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.258e-13
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)4.297e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)4.297e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.192e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.503e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.503e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)2.122e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.502e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.502e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)2.198e-12
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)2.198e-12
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)2.198e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.697e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)8.644e-13
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)5e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)7.171e-12
Glyma.11G094800 hypothetical protein NA 1Chr11:7199274–7201137 (+)2.04e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.058e-12
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)1.695e-12
Glyma.11G184400 hypothetical protein NA 1Chr11:25256684–25259757 (+)6.384e-12
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)5.726e-12
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)5.726e-12
Glyma.11G185000 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25310949–25318127 (+)3.938e-14
Glyma.11G185200 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25361462–25369894 (+)3.938e-14
Glyma.11G185300 hypothetical protein AT3G44540:FAR4:fatty acid reductase 4 1Chr11:25389935–25398374 (-)3.938e-14
Glyma.11G185500 hypothetical protein AT5G20890:AT5G20890:TCP-1/cpn60 chaperonin family protein 1Chr11:25416977–25424958 (-)3.938e-14
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)3.249e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.687e-16
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)2.472e-12
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)8.821e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)8.821e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.141e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.141e-13
Glyma.13G002100 hypothetical protein AT1G64630:WNK10:with no lysine (K) kinase 10 1Chr13:612162–615666 (-)7.815e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.435e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.285e-11
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)2.894e-15
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.58e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.02e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.58e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.58e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.391e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.404e-15
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)7.699e-13
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)7.699e-13
Glyma.15G152900 hypothetical protein AT4G15755:AT4G15755:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr15:12680146–12681864 (-)1.11e-13
Glyma.15G153400 hypothetical protein NA 1Chr15:12730592–12733439 (+)2.151e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.761e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.221e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)3.167e-12
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)8.054e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.316e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.533e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.533e-13
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)6.1e-13
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)7.827e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)7.827e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)4.042e-11
Glyma.18G110000 hypothetical protein AT3G14600:AT3G14600:Ribosomal protein L18ae/LX family protein 1Chr18:12778275–12781157 (-)8.898e-12
Glyma.18G116600 hypothetical protein NA 1Chr18:14262023–14265145 (+)1.821e-11
Glyma.18G117100 BZIP36 bZIP transcription factor bZIP36 AT5G11260:HY5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr18:14387749–14391456 (-)1.821e-11
Glyma.18G117800 hypothetical protein NA 1Chr18:14525379–14528117 (-)6.097e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)6.131e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)3.139e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.301e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.3e-11
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)1.003e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)1.778e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.092e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.153e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.01e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)7.655e-11