Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07384

Metabolite ID
P07384
Deionized mass
293.0919 Da
Average m/z
294.0977
Average RT
9.3945
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
110
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

110 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)5.744e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.793e-12
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)3.909e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)1.152e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)9.046e-14
Glyma.08G215500 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr08:17476921–17480079 (+)5.183e-16
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.879e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.879e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.879e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.198e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.129e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 2Chr19:885045–893253 (+)2.826e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.241e-17
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)3.385e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.416e-19
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.416e-19
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.793e-12
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)2.72e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.812e-12
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)3.909e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)5.782e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.064e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.511e-11
Glyma.02G109400 hypothetical protein NA 1Chr02:10495046–10497626 (-)1.662e-12
Glyma.02G109900 hypothetical protein AT2G03150:emb1579:ATP/GTP-binding protein family 1Chr02:10547851–10557930 (+)1.662e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)3.006e-15
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.068e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.529e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)5.731e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)6.032e-14
Glyma.03G035600 hypothetical protein NA 1Chr03:4295128–4296444 (-)1.796e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.936e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.316e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.854e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.655e-14
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.415e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.764e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)3.722e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.479e-11
Glyma.08G031900 hypothetical protein AT4G29230:NAC075:NAC domain containing protein 75 1Chr08:2547941–2553643 (+)5.4e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)9.398e-11
Glyma.08G215400 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:17463087–17467014 (+)5.183e-16
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.29e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.29e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.189e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.558e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.46e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.01e-15
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.661e-13
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)4.251e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.896e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.502e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.879e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.879e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.879e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.075e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.879e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.879e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.5e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.826e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.826e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.826e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.826e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.206e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.973e-14
Glyma.10G211400 hypothetical protein AT1G48850:EMB1144:chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase 1Chr10:44391876–44402240 (-)4.067e-11
Glyma.10G212400 hypothetical protein AT3G12090:TET6:tetraspanin6 1Chr10:44497054–44499043 (-)9.47e-13
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)9.934e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)8.562e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.235e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.709e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.709e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.508e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.508e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.508e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.717e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)8.508e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)4.38e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)1.718e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)1.718e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.236e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)3.06e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)3.06e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.318e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.328e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.401e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)6.601e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.264e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)8.828e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)6.281e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)2.434e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)7.702e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)9.206e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)7.702e-12
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)7.702e-12
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)4.405e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)7.904e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.692e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)2.795e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)5.002e-14
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)7.277e-12
Glyma.19G009900 hypothetical protein NA 1Chr19:923053–937826 (-)1.201e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.241e-17
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.291e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)5.882e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.93e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.048e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.36e-13
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)2.443e-11
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)2.72e-11