Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07278

Metabolite ID
P07278
Deionized mass
435.1175 Da
Average m/z
436.1265
Average RT
9.3536
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
128
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

128 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)8.491e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)2.379e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)2.259e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)4.884e-14
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)1.212e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.994e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.994e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.994e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.399e-12
Glyma.16G178800 hypothetical protein NA 2Chr16:33950003–33953968 (-)1.073e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)7.058e-12
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)2.096e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)7.071e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.752e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.036e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.139e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.841e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.492e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.492e-14
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.195e-11
Glyma.02G267600 hypothetical protein NA 1Chr02:45202307–45205631 (-)5.409e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)4.861e-12
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)7.217e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.575e-17
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)7.49e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.512e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.5e-12
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)1.703e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)1.703e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.273e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.23e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.612e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)4.622e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.618e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.184e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.31e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.264e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.264e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)6.087e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.279e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)4.618e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)6.543e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.013e-13
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.153e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)8.861e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.348e-11
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)1.136e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)1.136e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)1.136e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)7.338e-18
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.681e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.143e-16
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.14e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.743e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.233e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.267e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.775e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.852e-11
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)2.479e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)2.479e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.994e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.994e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.994e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.994e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.994e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)9.834e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.004e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.254e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)2.016e-14
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.272e-13
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)3.314e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)1.779e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.466e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.466e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.948e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.762e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.516e-15
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)4.285e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.88e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.88e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)1.817e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.883e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.466e-12
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)4.875e-12
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)1.245e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.404e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.879e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.404e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.404e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.338e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.788e-16
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.199e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.199e-12
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)2.861e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.974e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.814e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.814e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.33e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)2.302e-12
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)1.76e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.514e-14
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)7.619e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)7.979e-11
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)3.396e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)3.396e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)3.396e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.629e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.117e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.117e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)1.47e-12
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)6.252e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)3.64e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)4.148e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)3.64e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)3.64e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)4.32e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)7.372e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)5.759e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.311e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.518e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)7.216e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)4.831e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)5.519e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)9.118e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.792e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.792e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)5.054e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.121e-11