Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06858

Metabolite ID
P06858
Deionized mass
388.1925 Da
Average m/z
389.1995
Average RT
9.2018
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.162e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)3.01e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)6.779e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.302e-13
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)3.469e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.164e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.145e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.927e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)3.986e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)4.156e-13
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)4.156e-13
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)4.041e-12
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)1.812e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.036e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.407e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.407e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.407e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.633e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)6.615e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.597e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.269e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.96e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.009e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.009e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.009e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.08e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.576e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.408e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.407e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.585e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.09e-13
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)2.54e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.217e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.217e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.217e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.217e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.714e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)8.247e-12
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)4.222e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.996e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.996e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.475e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.371e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.371e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.191e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.974e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.974e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.974e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.531e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)8.95e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.951e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.126e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.108e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.561e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.108e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.108e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)9.206e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.81e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.472e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.492e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.341e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)2.341e-11
Glyma.16G172800 hypothetical protein AT3G49142:AT3G49142:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:33359317–33362446 (+)8.785e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.666e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.648e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.648e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.142e-11