Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06818

Metabolite ID
P06818
Deionized mass
621.1354 Da
Average m/z
622.1471
Average RT
9.1868
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.9e-18
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)5.742e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.618e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.773e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)9.084e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 2Chr06:50586679–50589765 (+)2.478e-12
Glyma.07G107100 DHBK putative 3,4-dihydroxy-2-butanone kinase AT3G17770:AT3G17770:Dihydroxyacetone kinase 2Chr07:10447848–10456329 (+)8.201e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)1.711e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)1.511e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.034e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.078e-15
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.078e-15
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.542e-12
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)3.058e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.957e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.957e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.957e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)8.845e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.239e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.57e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.337e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.924e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.634e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)4.078e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)5.742e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)5.742e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.393e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.417e-12
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.588e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.534e-13
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)8.327e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.669e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)7.713e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.315e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.769e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.599e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2e-12
Glyma.11G095600 hypothetical protein AT1G50460:HKL1:hexokinase-like 1 1Chr11:7249880–7254364 (-)4.945e-12
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)1.669e-11
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)1.669e-11
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)1.669e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.18e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.511e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.334e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.034e-12
Glyma.15G012000 hypothetical protein NA 1Chr15:936268–944374 (+)3.801e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.999e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.265e-16
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.969e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.611e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.858e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)6.418e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.618e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.928e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.928e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.234e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.234e-11
Glyma.18G269600 hypothetical protein NA 1Chr18:55329219–55333846 (+)7.676e-11