Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06761

Metabolite ID
P06761
Deionized mass
506.1973 Da
Average m/z
507.2035
Average RT
9.1642
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
119
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

119 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.821e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.192e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.673e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.913e-12
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 3Chr20:34757381–34771672 (+)9.181e-12
Glyma.01G034300 hypothetical protein NA 2Chr01:3573149–3579461 (-)4.423e-11
Glyma.02G200700 hypothetical protein AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein 2Chr02:38435454–38459254 (-)9.047e-11
Glyma.02G202100 hypothetical protein AT3G52610:AT3G52610:GATA zinc finger protein 2Chr02:38707852–38719801 (+)8.741e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)7.549e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)4.045e-18
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)4.045e-18
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.045e-18
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)6.599e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.83e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.511e-12
Glyma.14G208900 hypothetical protein AT1G17200:AT1G17200:Uncharacterized protein family (UPF0497) 2Chr14:47451105–47454596 (-)3.652e-12
Glyma.14G209000 hypothetical protein NA 2Chr14:47461788–47463395 (+)3.652e-12
Glyma.14G210600 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 2Chr14:47557927–47561596 (-)6.421e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)9.19e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.192e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.208e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.413e-11
Glyma.20G105400 hypothetical protein AT2G17010:AT2G17010:Mechanosensitive ion channel family protein 2Chr20:34796301–34808587 (+)1.025e-13
Glyma.20G105900 hypothetical protein AT2G16990:AT2G16990:Major facilitator superfamily protein 2Chr20:34832271–34839955 (-)3.558e-13
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)1.472e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.332e-13
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)8.188e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)8.188e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.462e-13
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)2.713e-11
Glyma.02G200600 hypothetical protein AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 1Chr02:38432334–38436063 (+)9.047e-11
Glyma.02G201100 hypothetical protein AT5G06200:CASP4:Uncharacterized protein family (UPF0497) 1Chr02:38497390–38499369 (-)9.047e-11
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 1Chr02:38539394–38547251 (+)9.047e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.115e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.31e-11
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)1.043e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.79e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.739e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.739e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.647e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.511e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.511e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.511e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)4.462e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.337e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.662e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.157e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.188e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)2.35e-11
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 1Chr06:14104416–14111842 (+)1.7e-12
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)2.997e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)8.992e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)7.549e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)4.587e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.045e-18
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.733e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.045e-18
Glyma.08G123100 hypothetical protein AT3G20050:TCP-1:T-complex protein 1 alpha subunit 1Chr08:9468076–9475710 (-)1.756e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)2.122e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)6.969e-14
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)6.969e-14
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.346e-17
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)9.373e-12
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)9.373e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)9.373e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.566e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.288e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.288e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.288e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.288e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.773e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.954e-13
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)2.628e-11
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)2.628e-11
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)2.628e-11
Glyma.12G002400 hypothetical protein AT5G47850:CCR4:CRINKLY4 related 4 1Chr12:197288–200229 (+)7.235e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.416e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.416e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.181e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.023e-12
Glyma.14G083200 hypothetical protein NA 1Chr14:7249145–7256947 (-)5.623e-15
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)2.063e-16
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.498e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.383e-11
Glyma.14G097400 hypothetical protein AT5G11960:AT5G11960:magnesium transporter, putative (DUF803) 1Chr14:9185419–9190929 (-)2.937e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.83e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.511e-12
Glyma.14G208600 hypothetical protein NA 1Chr14:47437358–47439597 (-)7.007e-12
Glyma.14G208700 hypothetical protein NA 1Chr14:47442866–47447625 (-)7.007e-12
Glyma.14G209100 hypothetical protein NA 1Chr14:47464224–47465243 (+)3.652e-12
Glyma.14G209200 hypothetical protein NA 1Chr14:47466917–47468975 (+)7.007e-12
Glyma.14G209600 hypothetical protein NA 1Chr14:47485565–47488948 (-)7.007e-12
Glyma.14G209800 hypothetical protein AT5G17240:SDG40:SET domain group 40 1Chr14:47508042–47511868 (+)3.652e-12
Glyma.14G209900 hypothetical protein NA 1Chr14:47515899–47521687 (+)3.652e-12
Glyma.14G211000 IDH1 AT1G65930:cICDH:cytosolic NADP+-dependent isocitrate dehydrogenase 1Chr14:47592207–47597473 (+)2.394e-12
Glyma.14G211100 hypothetical protein AT1G65960:GAD2:glutamate decarboxylase 2 1Chr14:47603425–47609079 (+)2.394e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.804e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)8.655e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.539e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.648e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.282e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.991e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.975e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)5.684e-14
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)1.043e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)7.589e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.65e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.673e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.139e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.139e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.987e-15
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.987e-15
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.07e-14
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.944e-11
Glyma.20G104600 hypothetical protein NA 1Chr20:34682410–34684475 (-)4.324e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)4.54e-11
Glyma.20G105600 hypothetical protein AT2G17033:AT2G17033:pentatricopeptide (PPR) repeat-containing protein 1Chr20:34818550–34820435 (-)1.025e-13
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 1Chr20:34868954–34885305 (-)3.953e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)9.988e-11