Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06623

Metabolite ID
P06623
Deionized mass
146.0367 Da
Average m/z
147.0447
Average RT
9.1163
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
118
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

118 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)5.429e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)6.718e-15
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)8.471e-14
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)2.462e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.091e-11
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)1.223e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.709e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.061e-12
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 3Chr20:34868954–34885305 (-)4.324e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)4.635e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.479e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.479e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.687e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)7.3e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.649e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)4.454e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.945e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.19e-16
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.448e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.722e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)7.337e-11
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)4.389e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)4.389e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)2.967e-14
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)8.776e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.628e-17
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.601e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)4.929e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)2.233e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)2.233e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)2.233e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.611e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.611e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.678e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.105e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.105e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.105e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.47e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.341e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.35e-13
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.925e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.432e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.048e-23
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.157e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.897e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.897e-14
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)6.058e-11
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)6.962e-13
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.308e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.308e-11
Glyma.06G304200 hypothetical protein AT1G04910:AT1G04910:O-fucosyltransferase family protein 1Chr06:49352555–49358511 (-)4.44e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.091e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.091e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.961e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.479e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.479e-14
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.492e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.479e-14
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.687e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.687e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.586e-17
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)1.223e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)1.223e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.614e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.614e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.427e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.427e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.427e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.427e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)4.738e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.899e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.899e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.487e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.487e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.165e-11
Glyma.13G199800 hypothetical protein NA 1Chr13:31353786–31356378 (+)9.642e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.137e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.137e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.137e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.53e-14
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)1.907e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)1.907e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.066e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.368e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.709e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.709e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.332e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.067e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.061e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.477e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.477e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.864e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.864e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)3.343e-11
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)6.364e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)6.364e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.432e-13
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)2.394e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.345e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.616e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.616e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.616e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)9.06e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.433e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.84e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.203e-11
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)5.429e-12
Glyma.20G105000 F-box/LRR-repeat protein 10 AT2G17020:AT2G17020:F-box/RNI-like superfamily protein 1Chr20:34726756–34729686 (+)2.27e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)5.052e-13
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)2.246e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.641e-15
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.216e-14
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.431e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.492e-14
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)2.651e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.494e-15
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.931e-13
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)5.638e-11