Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06244

Metabolite ID
P06244
Deionized mass
140.5508 Da
Average m/z
141.5582
Average RT
8.9544
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.664e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)7.874e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)6.909e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.253e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.265e-11
Glyma.16G178800 hypothetical protein NA 2Chr16:33950003–33953968 (-)1.631e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.514e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)2.023e-14
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)2.023e-14
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)9.356e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.862e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.466e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.808e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.694e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.795e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.795e-11
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)1.417e-11
Glyma.08G116800 hypothetical protein AT1G29240:AT1G29240:transcription initiation factor TFIID subunit, putative (DUF688) 1Chr08:9006479–9010442 (-)5.491e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)5.225e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)9.256e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.256e-11
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)1.741e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.225e-11
Glyma.08G204700 hypothetical protein AT1G79840:GL2:HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein 1Chr08:16594092–16600507 (+)4.745e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.704e-11
Glyma.08G205200 hypothetical protein AT1G15230:AT1G15230:uncharacterized protein 1Chr08:16611893–16613679 (-)3.695e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.87e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.341e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.973e-11
Glyma.09G111200 hypothetical protein AT3G12110:ACT11:actin-11 1Chr09:22031217–22034701 (+)4.476e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.884e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.265e-11
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)9.398e-11
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)7.968e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)7.968e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)7.968e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.282e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)8.499e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.334e-13
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)6.909e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.601e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.601e-16
Glyma.20G084500 hypothetical protein AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A 1Chr20:31666190–31674959 (-)2.885e-12
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)3.381e-11