Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06042

Metabolite ID
P06042
Deionized mass
256.1094 Da
Average m/z
257.1182
Average RT
8.8831
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.813e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)3.3e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)7.024e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.459e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.821e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.821e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.108e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.354e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)1.574e-11
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)1.574e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)3.79e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.299e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.119e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.826e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.003e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.003e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.303e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.176e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.899e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.026e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.252e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.931e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.252e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.252e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.931e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)2.455e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)5.701e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.015e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.16e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.451e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.663e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.197e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.491e-11
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)1.505e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.226e-12
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)2.089e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.812e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.812e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.138e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.139e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.254e-16
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.137e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.137e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.385e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.459e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.997e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.997e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.821e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.999e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.568e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.892e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.429e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.892e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.891e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.607e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.758e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)8.545e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)4.069e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.072e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.803e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.406e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.38e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.577e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.709e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.709e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)2.76e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)1.639e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.152e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.221e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.221e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.24e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.447e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.731e-11