Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06005

Metabolite ID
P06005
Deionized mass
461.1514 Da
Average m/z
462.1586
Average RT
8.8719
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)4.161e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.839e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)8.428e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)4.313e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.325e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.325e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.325e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.433e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.388e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)5.113e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.354e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.173e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.74e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.192e-12
Glyma.05G237500 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr05:41383632–41394607 (+)9.81e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.524e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.585e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.585e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.585e-11
Glyma.06G114700 hypothetical protein AT1G77510:PDIL1-2:PDI-like 1-2 1Chr06:9307220–9315112 (+)9.052e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.792e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.792e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)9.307e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)9.307e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.839e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.839e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.153e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)8.733e-12
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)1.353e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)2.715e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.338e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.325e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.325e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.325e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)5.083e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.325e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.325e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.416e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)6.57e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.518e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.518e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.518e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.131e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)4.102e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.15e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.15e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.15e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.15e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.666e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.388e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.625e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.625e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.906e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.517e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.906e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.906e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.177e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.336e-18
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.266e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)9.582e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.765e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.125e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.161e-14
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.733e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.386e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.649e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.259e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.316e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.431e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.676e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.917e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)8.351e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.287e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)4.052e-12