Overview Annotation GWAS Evidence Associated genes

P05856

Metabolite ID
P05856
Deionized mass
254.1227 Da
Average m/z
255.1311
Average RT
8.8434
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
140
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

140 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)1.553e-17
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.596e-13
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)1.424e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.18e-12
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 3Chr15:48661607–48665946 (-)5.412e-16
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.09e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.391e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.24e-18
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.291e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.719e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.172e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.231e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.488e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.596e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)6.475e-11
Glyma.01G039700 hypothetical protein AT1G10385:AT1G10385:Vps51/Vps67 family (components of vesicular transport) protein 1Chr01:4304713–4310259 (-)9.094e-11
Glyma.02G060500 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr02:5473294–5489985 (-)5.172e-11
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)8.409e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.227e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.448e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.373e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)4.687e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.012e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.457e-15
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.028e-18
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.947e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.652e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.354e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.594e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.111e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.111e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.226e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.163e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.163e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.163e-16
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)6.131e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.606e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)7.166e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.101e-12
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)4.464e-13
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)4.464e-13
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)6.867e-12
Glyma.06G190600 hypothetical protein NA 1Chr06:16718710–16723775 (-)4.508e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)3.085e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)6.087e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.391e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.391e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.391e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.391e-14
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)2.47e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)8.24e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.486e-15
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.486e-15
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)6.072e-13
Glyma.08G331100 hypothetical protein AT4G26620:AT4G26620:Sucrase/ferredoxin-like family protein 1Chr08:44883493–44888239 (+)6.294e-11
Glyma.08G331200 hypothetical protein AT4G12590:AT4G12590:ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane) 1Chr08:44892503–44895611 (-)6.294e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)7.181e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.193e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)2.483e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)2.483e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.582e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)5.797e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)9.884e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.173e-16
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.443e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.562e-16
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)6.35e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.301e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)4.478e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.584e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.291e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)7.615e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)6.571e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)7.133e-11
Glyma.12G018000 hypothetical protein NA 1Chr12:1252709–1256330 (-)8.835e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.079e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.079e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.044e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.043e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)3.317e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.944e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.944e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.878e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.436e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.291e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.291e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.604e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.207e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.207e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.207e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.142e-12
Glyma.13G219300 hypothetical protein AT1G30190:AT1G30190:cotton fiber protein 1Chr13:33254523–33255542 (+)7.788e-11
Glyma.13G219700 hypothetical protein AT1G61280:AT1G61280:Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit__AT2G39445:AT2G39445:Phos… 1Chr13:33268846–33272890 (-)7.788e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.747e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.326e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.291e-13
Glyma.15G030100 hypothetical protein AT2G43290:MSS3:Calcium-binding EF-hand family protein__AT4G03290:AT4G03290:EF hand calcium-binding protein family 1Chr15:2420032–2426219 (+)1.212e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.226e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.566e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.225e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.226e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.243e-12
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)1.476e-14
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.943e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.569e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.246e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.09e-14
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.09e-14
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.282e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.346e-18
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.38e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.166e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.8e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.716e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.451e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.319e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.319e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.448e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.448e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)5.375e-14
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)2.887e-12
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)3.283e-11
Glyma.17G155900 hypothetical protein NA 1Chr17:13234061–13236463 (+)1.168e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)1.249e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)6.204e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)7.456e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)5.917e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)8.099e-14
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.231e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)2.818e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.942e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.942e-14
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)1.369e-12
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)1.369e-12
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)1.369e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)3.238e-13
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)5.863e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.063e-11
Glyma.19G216500 hypothetical protein AT3G62390:TBL6:TRICHOME BIREFRINGENCE-LIKE 6 1Chr19:46951591–46954520 (+)5.484e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.348e-11