Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05829

Metabolite ID
P05829
Deionized mass
228.0983 Da
Average m/z
229.1068
Average RT
8.8369
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.522e-15
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 3Chr12:35879106–35881779 (+)2.19e-12
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)5.936e-14
Glyma.02G200700 hypothetical protein AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein 2Chr02:38435454–38459254 (-)2.581e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.643e-15
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.976e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.941e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.636e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)5.401e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.552e-13
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)5.496e-11
Glyma.02G200600 hypothetical protein AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 1Chr02:38432334–38436063 (+)2.581e-11
Glyma.02G201100 hypothetical protein AT5G06200:CASP4:Uncharacterized protein family (UPF0497) 1Chr02:38497390–38499369 (-)2.581e-11
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 1Chr02:38539394–38547251 (+)2.581e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.087e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.705e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)4.598e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.864e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.216e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.99e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.176e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.606e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.433e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.433e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)3.641e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.522e-15
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.522e-15
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.624e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.107e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.217e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.404e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)8.483e-12
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)4.437e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)8.483e-12
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)3.244e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.743e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.731e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)3.492e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.22e-13
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)2.19e-12
Glyma.12G197500 hypothetical protein NA 1Chr12:35869162–35874097 (+)2.19e-12
Glyma.12G197800 hypothetical protein NA 1Chr12:35892655–35896825 (-)2.191e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.127e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)5.747e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.712e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)7.017e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)7.017e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.939e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.862e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.862e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.012e-18
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.173e-15
Glyma.16G050000 hypothetical protein AT5G14040:PHT3;1:phosphate transporter 3;1 1Chr16:4788380–4801207 (+)1.058e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.426e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.359e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)5.668e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.981e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.236e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.589e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)2.125e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)5.427e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)5.427e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.167e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.167e-12
Glyma.19G022500 hypothetical protein AT5G15230:GASA4:GAST1 protein homolog 4 1Chr19:2574642–2577346 (+)2.19e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.258e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.206e-11