Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05727

Metabolite ID
P05727
Deionized mass
661.2973 Da
Average m/z
662.3027
Average RT
8.8160
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.084e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.47e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.616e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)7.549e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)8.1e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.1e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.452e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.539e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.017e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.289e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.323e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.323e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)7.001e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.811e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.692e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.027e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.661e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.97e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.57e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.916e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.916e-14
Glyma.06G147600 BRI1A brassinosteroid receptor AT4G39400:BRI1:Leucine-rich receptor-like protein kinase family protein 1Chr06:12052122–12056526 (-)8.301e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.144e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.144e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.218e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.768e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)7.549e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.1e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.1e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.64e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.1e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.185e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.185e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.273e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.215e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.703e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.703e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.703e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.703e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.881e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.881e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.56e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.672e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.481e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.481e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.607e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)9.761e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.452e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.033e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.099e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.033e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.033e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.738e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.3e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.274e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.084e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)5.034e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.47e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.47e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.47e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.47e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.342e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.978e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)8.552e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.379e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.493e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.493e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.783e-11