Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05479

Metabolite ID
P05479
Deionized mass
477.1448 Da
Average m/z
478.1518
Average RT
8.7429
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 4Chr16:30652378–30659548 (+)3.626e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.238e-17
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)7.809e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)8.051e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.732e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)3.002e-13
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)7.621e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.743e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)4.295e-15
Glyma.12G018000 hypothetical protein NA 2Chr12:1252709–1256330 (-)6.928e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.441e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.815e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.814e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.746e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.743e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.471e-11
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)6.257e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)1.578e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.861e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)3.039e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)3.039e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)3.324e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.456e-16
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.742e-14
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.648e-15
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.348e-14
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.448e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.448e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.448e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.448e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.448e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.448e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.448e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)3.002e-13
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)1.411e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.564e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.564e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)7.914e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.173e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.941e-14
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.676e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.694e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)6.51e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)6.274e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.261e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.757e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.775e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.156e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.719e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)8.108e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)2.634e-13
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)7.563e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.222e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.913e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)8.966e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.819e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)2.836e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)7.189e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)7.189e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.004e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)6.638e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.397e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.021e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.29e-14
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.932e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.932e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.932e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.932e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.402e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.453e-12
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)1.591e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)7.744e-13
Glyma.12G003500 hypothetical protein AT5G61670:AT5G61670:orange protein 1Chr12:285588–289372 (-)1.159e-11
Glyma.12G003900 hypothetical protein AT5G51550:EXL3:EXORDIUM like 3 1Chr12:302437–304546 (+)8.331e-11
Glyma.12G014800 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr12:1071368–1079413 (+)9.353e-11
Glyma.12G015800 hypothetical protein NA 1Chr12:1126280–1132370 (-)9.353e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.146e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.146e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.048e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.048e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.355e-12
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)1.539e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.671e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.671e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.441e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.809e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.809e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.815e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.565e-14
Glyma.13G201300 hypothetical protein NA 1Chr13:31497499–31499001 (+)9.043e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.113e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)4.619e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.842e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.859e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.909e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.743e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.647e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.905e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.647e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.647e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.261e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.989e-14
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.989e-14
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)8.971e-15
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.696e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.696e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.561e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.282e-13
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)3.487e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.883e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)8.324e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.683e-14
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.683e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)3.611e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)9.458e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)5.996e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.626e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.027e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)9.847e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.34e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)5.53e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.732e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)5.255e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.944e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.94e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.94e-13
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)2.846e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.035e-15
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)9.142e-11