Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05425

Metabolite ID
P05425
Deionized mass
451.1546 Da
Average m/z
452.1637
Average RT
8.7261
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
141
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

141 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G090600 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 4Chr18:8991445–9001857 (-)8.935e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.966e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.735e-15
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)5.203e-16
Glyma.07G068800 hypothetical protein NA 2Chr07:6211775–6221107 (-)6.055e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)5.577e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)5.407e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.949e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.949e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.618e-16
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)7.055e-14
Glyma.18G090100 hypothetical protein NA 2Chr18:8939839–8941585 (+)8.935e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)9.799e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.97e-12
Glyma.19G057000 hypothetical protein NA 2Chr19:10403335–10404974 (-)1.414e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.223e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)2.954e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)1.738e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.944e-16
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)1.377e-11
Glyma.03G020400 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2 1Chr03:2078755–2084370 (+)8.655e-11
Glyma.03G020500 hypothetical protein AT2G45610:AT2G45610:alpha/beta-Hydrolases superfamily protein 1Chr03:2091153–2093117 (+)8.029e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)4.729e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.417e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.685e-14
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)1.784e-11
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)4.89e-13
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)4.867e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.834e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.57e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.798e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.605e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.085e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)9.562e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)9.565e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)9.562e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.03e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.325e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.325e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.325e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.014e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.014e-12
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)4.543e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.186e-16
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.725e-13
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)5.724e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)8.18e-11
Glyma.06G276300 hypothetical protein NA 1Chr06:46741410–46744086 (-)1.928e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.168e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.645e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.168e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.168e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.645e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.083e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.535e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.108e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.97e-13
Glyma.07G073100 hypothetical protein NA 1Chr07:6656839–6661250 (-)9.984e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)6.332e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)2.289e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.361e-15
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.058e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.632e-11
Glyma.08G207300 hypothetical protein NA 1Chr08:16745344–16755320 (+)2.33e-11
Glyma.08G207400 hypothetical protein AT1G80000:AT1G80000:CASC3/Barentsz eIF4AIII binding protein 1Chr08:16756340–16761352 (+)2.33e-11
Glyma.08G207500 hypothetical protein NA 1Chr08:16760797–16761352 (+)2.33e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)7.476e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)2.59e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.673e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)6.938e-11
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)6.124e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.028e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.273e-12
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)7.481e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)5.625e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)6.216e-12
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)2.889e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.385e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.966e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.949e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.949e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.753e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.49e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.579e-17
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.094e-20
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.633e-16
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)4.233e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.104e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.104e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)2.037e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)5.119e-15
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)2.359e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)2.359e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)2.359e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.38e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)9.991e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.473e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)7.362e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)7.362e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.398e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.735e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.398e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.398e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.742e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.964e-17
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)6.003e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.544e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.875e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.303e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)1.031e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)5.795e-13
Glyma.18G089800 hypothetical protein AT5G55250:IAMT1:IAA carboxylmethyltransferase 1 1Chr18:8921173–8925579 (+)8.935e-11
Glyma.18G090300 hypothetical protein AT5G55210:AT5G55210:uncharacterized protein 1Chr18:8954961–8957926 (+)8.935e-11
Glyma.18G090500 hypothetical protein AT4G26810:AT4G26810:SWIB/MDM2 domain superfamily protein 1Chr18:8979176–8986302 (-)8.935e-11
Glyma.18G090800 hypothetical protein AT3G20300:AT3G20300:extracellular ligand-gated ion channel protein (DUF3537) 1Chr18:9018768–9024832 (-)8.935e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)9.848e-12
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)2.956e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)2.956e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.2e-11
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)3.632e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)2.029e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.294e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.538e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.056e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.056e-11
Glyma.19G031200 hypothetical protein NA 1Chr19:3870532–3874170 (-)4.164e-11
Glyma.19G032500 hypothetical protein NA 1Chr19:4140729–4141955 (-)7.954e-11
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)2.841e-11
Glyma.19G052900 hypothetical protein NA 1Chr19:8583097–8583963 (+)1.414e-12
Glyma.19G053000 hypothetical protein NA 1Chr19:8595506–8596004 (+)1.414e-12
Glyma.19G053200 hypothetical protein AT5G45910:AT5G45910:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr19:8614188–8615729 (-)1.414e-12
Glyma.19G060200 hypothetical protein AT3G27570:AT3G27570:Sucrase/ferredoxin-like family protein__AT5G40510:AT5G40510:Sucrase/ferredoxin-like family protein 1Chr19:11917708–11922501 (-)3.264e-11
Glyma.19G060900 hypothetical protein NA 1Chr19:12184420–12191004 (+)1.414e-12
Glyma.19G062200 hypothetical protein NA 1Chr19:13057166–13057974 (-)1.414e-12
Glyma.19G066600 hypothetical protein NA 1Chr19:18168108–18174666 (+)1.414e-12
Glyma.19G066800 hypothetical protein AT5G53430:SDG29:SET domain group 29 1Chr19:18371538–18401257 (+)1.414e-12
Glyma.19G068500 hypothetical protein NA 1Chr19:20969006–20969859 (-)3.264e-11
Glyma.19G070700 hypothetical protein AT1G70790:AT1G70790:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr19:23598719–23603130 (+)1.414e-12
Glyma.19G073200 hypothetical protein AT1G25390:AT1G25390:Protein kinase superfamily protein 1Chr19:26248452–26264052 (+)1.414e-12
Glyma.20G179600 hypothetical protein AT2G39220:PLP6:PATATIN-like protein 6__AT3G54950:pPLAIIIbeta:patatin-like protein 6 1Chr20:41714740–41719977 (-)3.177e-12
Glyma.20G222800 hypothetical protein AT3G04760:AT3G04760:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr20:45748122–45750353 (+)8.033e-12