Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05400

Metabolite ID
P05400
Deionized mass
345.1800 Da
Average m/z
346.1890
Average RT
8.7199
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.031e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)6.32e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.895e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.344e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)1.27e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.475e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)9.745e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.169e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.272e-14
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)4.4e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.031e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)7.812e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.004e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.703e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.291e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.519e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.663e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.036e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.036e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.036e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.185e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.512e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)2.896e-12
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)2.896e-12
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)9.654e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.475e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.475e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.475e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.475e-14
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.561e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.301e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.509e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.188e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.663e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.169e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.913e-12
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)5.275e-11
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)8.535e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.076e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.488e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.895e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.895e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.302e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.25e-16
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.316e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.316e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.942e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.942e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.76e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.76e-14
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)7.473e-14
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)1.392e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.448e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.391e-11