Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05023

Metabolite ID
P05023
Deionized mass
144.0420 Da
Average m/z
289.0919
Average RT
8.5356
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
39
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

39 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G060000 hypothetical protein NA 5Chr09:5548206–5554279 (-)9.944e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 2Chr09:5513108–5520158 (+)7.194e-12
Glyma.09G060100 hypothetical protein AT5G57160:ATLIG4:DNA ligase IV 2Chr09:5561072–5570789 (+)9.944e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr09:5571201–5579976 (-)7.194e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.623e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)2.203e-11
Glyma.20G009700 hypothetical protein AT2G15820:OTP51:endonuclease 2Chr20:847971–851447 (+)4.167e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.875e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.875e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.535e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.879e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.334e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.307e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.07e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.07e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.365e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)7.194e-12
Glyma.09G059900 hypothetical protein AT4G26000:PEP:RNA-binding KH domain-containing protein 1Chr09:5540197–5546848 (+)9.944e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)6.486e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.899e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.899e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.255e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.626e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.626e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.618e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.553e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.045e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.045e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)7.774e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.408e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.742e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.774e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.189e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.381e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.612e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.167e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.167e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.328e-11