Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04769

Metabolite ID
P04769
Deionized mass
259.1856 Da
Average m/z
260.1937
Average RT
8.3357
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.929e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.637e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)5.807e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.233e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.299e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.737e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.17e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)5.806e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.929e-11
Glyma.02G046600 hypothetical protein AT2G17820:HK1:histidine kinase 1 1Chr02:4276605–4283705 (-)4.534e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)9.712e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.625e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)1.724e-11
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)1.724e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)3.216e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.054e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)8.017e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.207e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.117e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)9.73e-13
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)5.209e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)2.31e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.277e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.59e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.881e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.564e-11
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)1.261e-11
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)1.261e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)1.557e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)7.958e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)1.02e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.573e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.573e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.709e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.709e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.078e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.328e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)6.3e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.299e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.98e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.428e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.428e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.428e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.737e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)7.059e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.112e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.71e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.112e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.112e-12
Glyma.15G261600 hypothetical protein AT1G16280:RH36:RNA helicase 36 1Chr15:49391698–49397734 (-)4.09e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.923e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.17e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.69e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.715e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.193e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)7.46e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)7.46e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.806e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.337e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.105e-11