Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04569

Metabolite ID
P04569
Deionized mass
429.1497 Da
Average m/z
430.1552
Average RT
8.1946
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.225e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.041e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.073e-15
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)9.544e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)4.089e-19
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.639e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.246e-11
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)1.324e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.225e-14
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.644e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.644e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.382e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.36e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.892e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.024e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.374e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.084e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.304e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.997e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.997e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.48e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.21e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.21e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.21e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.551e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)1.49e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.83e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.074e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.903e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.903e-11
Glyma.06G190600 hypothetical protein NA 1Chr06:16718710–16723775 (-)1.961e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)4.436e-11
Glyma.06G202300 SF3'H1 flavonoid 3'-hydroxylase AT5G07990:TT7:Cytochrome P450 superfamily protein 1Chr06:18731105–18738025 (+)1.823e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.04e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.04e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.902e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.902e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.975e-12
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)3.302e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.383e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.042e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.798e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.319e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.319e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)3.542e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.089e-19
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)6.696e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.518e-12
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)6.495e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.246e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.141e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.359e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.775e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.356e-15
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.356e-15
Glyma.17G167800 hypothetical protein AT5G67250:SKIP2:SKP1/ASK1-interacting protein 2 1Chr17:15513307–15515455 (+)4.134e-11
Glyma.17G169100 hypothetical protein AT3G50210:AT3G50210:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein__AT3G49620:DIN11:2-oxogluta… 1Chr17:15650607–15655215 (-)1.68e-12
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)2.348e-11