Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04433

Metabolite ID
P04433
Deionized mass
379.1393 Da
Average m/z
380.1452
Average RT
8.1194
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G023300 hypothetical protein NA 3Chr12:1711347–1715917 (+)3.371e-12
Glyma.08G094500 hypothetical protein NA 2Chr08:7184460–7192472 (+)1.118e-12
Glyma.12G008000 hypothetical protein AT3G52090:NRPB11:DNA-directed RNA polymerase, RBP11-like protein 2Chr12:592967–596657 (+)3.371e-12
Glyma.12G009300 hypothetical protein AT5G13710:SMT1:sterol methyltransferase 1 2Chr12:675878–679976 (+)3.371e-12
Glyma.12G009400 hypothetical protein AT3G59980:AT3G59980:Nucleic acid-binding, OB-fold-like protein 2Chr12:682744–686707 (-)3.371e-12
Glyma.12G020400 hypothetical protein AT1G51500:ABCG12:ABC-2 type transporter family protein 2Chr12:1445666–1452363 (-)2.432e-24
Glyma.12G025600 hypothetical protein AT5G23210:SCPL34:serine carboxypeptidase-like 34 2Chr12:1844961–1853018 (-)3.371e-12
Glyma.14G181400 hypothetical protein NA 2Chr14:44425961–44428711 (-)3.525e-24
Glyma.18G092500 hypothetical protein AT4G26860:AT4G26860:Putative pyridoxal phosphate-dependent enzyme, YBL036C type 2Chr18:9297573–9301621 (+)1.118e-12
Glyma.18G092700 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 2Chr18:9325338–9333553 (+)1.118e-12
Glyma.18G094200 hypothetical protein NA 2Chr18:9585391–9587972 (+)1.118e-12
Glyma.18G094700 hypothetical protein NA 2Chr18:9650627–9659495 (+)1.118e-12
Glyma.02G097300 hypothetical protein AT1G10840:TIF3H1:translation initiation factor 3 subunit H1 1Chr02:8740317–8744368 (+)3.371e-12
Glyma.02G097400 hypothetical protein AT3G28040:AT3G28040:Leucine-rich receptor-like protein kinase family protein 1Chr02:8742027–8748911 (-)3.371e-12
Glyma.02G250000 hypothetical protein AT1G13980:GN:sec7 domain-containing protein 1Chr02:43747970–43755063 (+)1.118e-12
Glyma.02G250200 hypothetical protein AT3G11410:PP2CA:protein phosphatase 2CA 1Chr02:43779470–43781548 (+)1.118e-12
Glyma.02G252500 hypothetical protein AT3G55646:AT3G55646:TPRXL 1Chr02:43963182–43966635 (+)1.118e-12
Glyma.02G266700 hypothetical protein NA 1Chr02:45131059–45134696 (+)1.118e-12
Glyma.05G008500 hypothetical protein NA 1Chr05:778242–783891 (+)1.118e-12
Glyma.05G013800 hypothetical protein AT3G18570:AT3G18570:Oleosin family protein__AT1G48990:AT1G48990:Oleosin family protein 1Chr05:1312429–1313494 (-)1.118e-12
Glyma.05G014200 hypothetical protein AT3G18580:AT3G18580:Nucleic acid-binding, OB-fold-like protein 1Chr05:1334985–1337743 (-)1.118e-12
Glyma.08G045800 hypothetical protein AT2G01690:AT2G01690:ARM repeat superfamily protein 1Chr08:3608149–3616450 (-)3.913e-12
Glyma.08G045900 hypothetical protein AT1G14850:NUP155:nucleoporin 155 1Chr08:3619845–3629674 (-)3.913e-12
Glyma.08G046400 hypothetical protein AT1G14830:DL1C:DYNAMIN-like 1C 1Chr08:3648645–3657756 (+)3.913e-12
Glyma.08G047200 hypothetical protein AT2G43350:GPX3:glutathione peroxidase 3 1Chr08:3689490–3692697 (-)1.101e-11
Glyma.08G095700 hypothetical protein AT1G06515:AT1G06515:transmembrane protein, putative (DUF3317) 1Chr08:7284128–7287584 (-)1.118e-12
Glyma.08G095800 hypothetical protein AT1G14920:GAI:GRAS family transcription factor family protein 1Chr08:7304924–7308800 (+)1.118e-12
Glyma.12G019500 hypothetical protein AT1G51405:AT1G51405:myosin-like protein 1Chr12:1373656–1376966 (+)3.371e-12
Glyma.12G021200 hypothetical protein NA 1Chr12:1524303–1527258 (+)3.371e-12
Glyma.12G021500 hypothetical protein AT1G50450:AT1G50450:Saccharopine dehydrogenase 1Chr12:1547281–1552018 (-)3.371e-12
Glyma.12G023500 hypothetical protein AT4G38810:AT4G38810:Calcium-binding EF-hand family protein 1Chr12:1729351–1733595 (+)3.371e-12
Glyma.12G023600 hypothetical protein NA 1Chr12:1733920–1735494 (-)8.839e-12
Glyma.12G026400 hypothetical protein AT5G23140:NCLPP7:nuclear-encoded CLP protease P7 1Chr12:1903630–1905558 (+)3.371e-12
Glyma.12G177300 hypothetical protein AT3G45040:AT3G45040:phosphatidate cytidylyltransferase family protein 1Chr12:33594800–33605403 (+)1.118e-12
Glyma.14G181200 hypothetical protein AT5G49700:AT5G49700:Putative AT-hook DNA-binding family protein 1Chr14:44412425–44413662 (-)1.118e-12
Glyma.14G181300 hypothetical protein AT4G24550:AT4G24550:Clathrin adaptor complexes medium subunit family protein 1Chr14:44416783–44424299 (-)1.118e-12
Glyma.15G103300 hypothetical protein AT3G06170:AT3G06170:Serinc-domain containing serine and sphingolipid biosynthesis protein 1Chr15:8066381–8070490 (-)3.371e-12
Glyma.17G062700 hypothetical protein AT3G02920:RPA32B:Replication protein A, subunit RPA32 1Chr17:4829089–4834095 (-)3.371e-12
Glyma.18G092600 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic AT3G20440:EMB2729:Alpha amylase family protein 1Chr18:9305015–9321777 (+)1.118e-12
Glyma.18G093400 hypothetical protein NA 1Chr18:9424510–9427919 (+)1.118e-12
Glyma.18G094300 hypothetical protein NA 1Chr18:9617770–9618624 (-)1.118e-12
Glyma.18G095200 hypothetical protein AT5G55040:AT5G55040:DNA-binding bromodomain-containing protein 1Chr18:9732437–9738098 (+)1.118e-12
Glyma.18G095400 hypothetical protein AT5G55040:AT5G55040:DNA-binding bromodomain-containing protein 1Chr18:9748448–9755084 (+)1.118e-12
Glyma.18G095600 hypothetical protein NA 1Chr18:9810199–9814709 (+)1.118e-12
Glyma.18G096000 hypothetical protein NA 1Chr18:9853440–9855049 (+)1.118e-12
Glyma.18G096200 hypothetical protein AT1G28490:SYP61:syntaxin of plants 61 1Chr18:9860188–9864208 (+)1.118e-12
Glyma.18G096300 hypothetical protein AT1G50710:AUG4:HAUS augmin-like complex subunit 1Chr18:9865915–9872588 (+)1.118e-12
Glyma.19G125600 hypothetical protein AT1G65440:GTB1:global transcription factor group B1 1Chr19:38382184–38391933 (-)3.371e-12
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)3.371e-12
Glyma.19G126500 hypothetical protein AT2G40930:UBP5:ubiquitin-specific protease 5 1Chr19:38503103–38515850 (-)3.371e-12
Glyma.19G126600 hypothetical protein NA 1Chr19:38519657–38524877 (-)3.371e-12
Glyma.20G106200 hypothetical protein NA 1Chr20:34862155–34865242 (+)1.118e-12
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 1Chr20:34868954–34885305 (-)1.118e-12
Glyma.20G111200 hypothetical protein AT5G05010:AT5G05010:clathrin adaptor complexes medium subunit family protein 1Chr20:35325497–35332549 (-)1.118e-12