SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Gene Associated metabolites Research resources

GENE DETAIL · Glycine max

Glyma.12G177300

Description hypothetical protein

Gene interval Chr12:33594800–33605403 (+), Wm82.a2.v1 · 1-based inclusive

Arabidopsis ortholog AT3G45040:AT3G45040:phosphatidate cytidylyltransferase family protein

Genome context

Explore gene–feature relationships using Overlap or Within ±5 kb. Scope definitions

Explore research resources ↓

Associated metabolite features4Overlap

Maximum supporting SNP records1

Features with ≥2 supporting SNP records0

Supporting SNP records satisfy P < 10⁻¹⁰ and the selected positional scope. Counts cover the 30345 features with indexed GWAS data.

Additional descriptive statistic

Mean supporting SNP records per associated feature: 1.

Research resources

Follow this gene identifier to compare annotations, examine protein function and find supporting literature.

SoyBase ↗Gene models and soybean annotations
NCBI Gene ↗Gene records, sequences and cross-references
UniProt ↗Protein function, domains and annotation evidence
PubMed ↗Publications mentioning this identifier

These links search the displayed identifier. Check the organism, genome assembly and evidence in the destination record.

Compare gene models, expression and reported orthologs

SoyBase gene-name translator ↗SoyBase expression resources ↗Legume Information System ↗

Arabidopsis IDs in the supplied annotation

AT3G45040NCBI Gene ↗UniProt ↗

Use expression and ortholog evidence to develop a testable hypothesis. The linked resources do not establish the function of this soybean gene in the measured samples.

Associated metabolites

Browse associated features and open their GWAS evidence or compound candidates.

4 matching features · page 1 of 1

Metabolite ID	Candidate annotation	Deionized mass (Da)	Supporting SNP records	Minimum P
P02095	2-Formyloxymethylclavam	171.0509	1	6.23e-18
P04433	Bocconoline	379.1393	1	1.118e-12
P27123	17beta-(Acetylthio)estra-1,3,5(10)-trien-3-ol acetate	372.1766	1	2.652e-12
P27652	(2S)-5,7,4'-Trihydroxy-6-(1,1-dimethylallyl)flavanone	340.1296	1	1.656e-14