Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04385

Metabolite ID
P04385
Deionized mass
392.1077 Da
Average m/z
393.1155
Average RT
8.1095
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
132
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

132 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)6.751e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.701e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.991e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)2.164e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)8.236e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.292e-11
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)1.927e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)8.716e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.304e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.761e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)9.108e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.202e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.671e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.484e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.39e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.701e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.404e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.404e-13
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)9.331e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)5.514e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.407e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.277e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.676e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.186e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.444e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.72e-17
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)9.716e-13
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.401e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.53e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.217e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.348e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.461e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.461e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.461e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.276e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.276e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.329e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.005e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)8.341e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.63e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.63e-11
Glyma.06G324300 GmCSyGT1 NA 1Chr06:51189321–51193954 (-)3.303e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.083e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.058e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.292e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.292e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.292e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.292e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)1.819e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)1.819e-11
Glyma.08G142900 hypothetical protein AT2G21860:AT2G21860:violaxanthin de-epoxidase-like protein 1Chr08:10869437–10872439 (+)9.517e-12
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)8.106e-14
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.524e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.892e-13
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)1.624e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.475e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.102e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.113e-16
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)6.21e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)5.022e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.792e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.792e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.026e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.026e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.026e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.026e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.511e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.442e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.837e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.592e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.96e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.96e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.96e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.96e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.336e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.219e-15
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.219e-15
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.219e-15
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)1.007e-12
Glyma.11G239100 hypothetical protein NA 1Chr11:33341784–33344981 (+)4.995e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.354e-11
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)2.72e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.453e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.453e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.735e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.515e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.515e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.681e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.487e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)9.634e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.716e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.428e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.304e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)4.261e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)3.601e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.749e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.057e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.108e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.69e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.124e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.69e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.69e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.092e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.759e-17
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.991e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.991e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.991e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.991e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.085e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.058e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.267e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.74e-11
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)4.285e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)8.163e-12
Glyma.16G167500 hypothetical protein NA 1Chr16:32707122–32710495 (+)1.282e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.136e-15
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.71e-12
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)9.275e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.996e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.996e-13
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)1.918e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)8.43e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.065e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.605e-14
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.573e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)9.573e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)7.375e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.746e-20
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.746e-20
Glyma.20G018000 hypothetical protein AT1G70820:AT1G70820:phosphoglucomutase, putative / glucose phosphomutase 1Chr20:1840259–1844405 (-)2.061e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.449e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.016e-12