Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04255

Metabolite ID
P04255
Deionized mass
318.0396 Da
Average m/z
319.0458
Average RT
8.0509
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
87
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

87 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)5.558e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.211e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)9.685e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.193e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.193e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.307e-13
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)1.23e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.961e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.322e-14
Glyma.01G165400 hypothetical protein AT4G36000:AT4G36000:Pathosis-related thaumatin superfamily protein 1Chr01:50285851–50288150 (-)7.395e-13
Glyma.01G165600 hypothetical protein NA 1Chr01:50305165–50307365 (-)2.38e-13
Glyma.01G165700 hypothetical protein NA 1Chr01:50316645–50317227 (-)1.262e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.274e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.923e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.177e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.301e-14
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.965e-12
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)1.145e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.751e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.697e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.046e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.835e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.738e-21
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.385e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.992e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.992e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.992e-13
Glyma.06G113100 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr06:9197790–9199755 (-)3.651e-11
Glyma.06G113300 hypothetical protein AT1G21810:AT1G21810:filament-like protein (DUF869) 1Chr06:9206753–9210941 (+)3.651e-11
Glyma.06G114700 hypothetical protein AT1G77510:PDIL1-2:PDI-like 1-2 1Chr06:9307220–9315112 (+)2.511e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.795e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.795e-12
Glyma.06G301000 hypothetical protein NA 1Chr06:49001317–49005605 (+)2.672e-11
Glyma.06G301100 hypothetical protein AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr06:49013527–49014231 (+)3.624e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)3.006e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)9.829e-13
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)1.833e-12
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)1.021e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.449e-14
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.971e-13
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)7.146e-12
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)5.749e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.346e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.346e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.346e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.472e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.314e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.066e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.066e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)8.917e-13
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)1.024e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)1.024e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)4.005e-12
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)2.858e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.558e-15
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)8.179e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.781e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.781e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.193e-11
Glyma.13G183400 hypothetical protein NA 1Chr13:29666942–29670201 (+)4.057e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)1.304e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.462e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.082e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.082e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.213e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.523e-16
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.523e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.846e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.041e-20
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)9.362e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.437e-15
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.032e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.379e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.31e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.774e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.383e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)2.145e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.661e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.661e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)8.51e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.127e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.139e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.267e-14
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)9.441e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.915e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.557e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.129e-13