Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04174

Metabolite ID
P04174
Deionized mass
142.0615 Da
Average m/z
143.0689
Average RT
8.0028
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
125
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

125 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)1.631e-15
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)3.904e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.48e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.165e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.75e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.792e-14
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.766e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)4.863e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.318e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.389e-12
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)1.589e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.879e-12
Glyma.01G039400 hypothetical protein AT1G10417:AT1G10417:RUN/FYVE domain protein 1Chr01:4270598–4275060 (+)5.512e-11
Glyma.01G040000 hypothetical protein NA 1Chr01:4336374–4338196 (+)8.194e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)3.904e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)8.545e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.564e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)2.932e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.311e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.595e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.416e-11
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)1.823e-13
Glyma.03G204100 hypothetical protein AT2G35890:CPK25:calcium-dependent protein kinase 25 1Chr03:41232349–41236699 (+)4.692e-11
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)4.144e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.048e-18
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)2.708e-11
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)2.934e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)2.934e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)3.416e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.497e-11
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)4.942e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.846e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.589e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.589e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.589e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.78e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.813e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.123e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.397e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.921e-13
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)7.713e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.575e-15
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)4.324e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.767e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.17e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)3.967e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)9.86e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)9.86e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)6.512e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)6.512e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)9.86e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)1.537e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.211e-11
Glyma.07G209600 hypothetical protein NA 1Chr07:38037644–38043272 (+)7.788e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)4.433e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)4.433e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.024e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.48e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.48e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.48e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.48e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.293e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.292e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.292e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.743e-15
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)3.889e-11
Glyma.08G313400 hypothetical protein AT1G50840:POLGAMMA2:polymerase gamma 2 1Chr08:43321796–43333918 (-)2.268e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.918e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.893e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.685e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.685e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)5.443e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.101e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.514e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.929e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.929e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)6.952e-13
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)2.427e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.003e-15
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)6.594e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.631e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.326e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.444e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)9.086e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.118e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.15e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)4.745e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)8.139e-14
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)8.139e-14
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.269e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.127e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.792e-14
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.938e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.938e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.599e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.963e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.247e-13
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)2.866e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)1.946e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.297e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)7.38e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.706e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.774e-11
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)5.854e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)5.854e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.466e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.466e-13
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.82e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)2.989e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.541e-11
Glyma.18G213500 hypothetical protein AT2G38550:AT2G38550:Transmembrane proteins 14C 1Chr18:50044567–50050213 (-)2.953e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.007e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)3.64e-13
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)9.147e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.219e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.229e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.229e-11
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)1.232e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)5.724e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.706e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)7.831e-13
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)5.866e-13
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)5.535e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.316e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.353e-14