Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04100

Metabolite ID
P04100
Deionized mass
315.1779 Da
Average m/z
316.1828
Average RT
7.9703
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)3.272e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.633e-11
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)7.764e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.042e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.22e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.633e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)7.764e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)5.529e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.961e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.272e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.376e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.083e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.809e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)6.38e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.875e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.344e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.212e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.212e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.212e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.212e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.043e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.804e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.887e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.887e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)5.075e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.075e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.264e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.264e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.03e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.488e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.449e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.488e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.488e-14
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)8.933e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)7.67e-14
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)7.67e-14
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.187e-14
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.348e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.38e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.615e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.334e-12
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)1.079e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.645e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)6.238e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)6.238e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.464e-16
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.81e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.81e-12
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)2.783e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)4.299e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)9.372e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.11e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.211e-12