Overview Annotation GWAS Evidence Associated genes

P04083

Metabolite ID
P04083
Deionized mass
306.0384 Da
Average m/z
307.0460
Average RT
7.9611
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
150
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

150 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)7.502e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.291e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.533e-18
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.828e-14
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.262e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.262e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.302e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.416e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.206e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.883e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.881e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.266e-14
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)2.11e-13
Glyma.15G141200 hypothetical protein AT3G17000:UBC32:ubiquitin-conjugating enzyme 32 2Chr15:11557041–11559982 (-)3.163e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.291e-13
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)5.299e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)4.706e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.26e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.539e-12
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)6.857e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)9.811e-12
Glyma.02G265700 hypothetical protein NA 1Chr02:45059017–45060529 (-)3.058e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.267e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.587e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.808e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.574e-11
Glyma.04G158400 hypothetical protein AT3G42660:AT3G42660:transducin family protein / WD-40 repeat family protein 1Chr04:38560905–38571145 (-)2.768e-11
Glyma.04G160700 hypothetical protein AT1G18610:AT1G18610:Galactose oxidase/kelch repeat superfamily protein 1Chr04:39818871–39825716 (+)2.768e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)5.8e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.497e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.744e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.008e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.008e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.222e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.331e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.331e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.331e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)1.149e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.935e-13
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)9.026e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)6.268e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)6.268e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)6.268e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)6.268e-12
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)2.573e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.636e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.325e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.959e-15
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.447e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.447e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.447e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.535e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.536e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.536e-14
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)9.084e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)6.067e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.052e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.32e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.32e-11
Glyma.06G293600 hypothetical protein AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein 1Chr06:48251255–48252791 (+)8.08e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.466e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.202e-13
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)3.769e-12
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)2.963e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.175e-13
Glyma.08G116300 P34 NA 1Chr08:8935918–8938248 (-)3.164e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.268e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.262e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.262e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.051e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.262e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.992e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.417e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.05e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.279e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)6.383e-11
Glyma.09G187600 hypothetical protein AT5G19460:NUDT20:nudix hydrolase homolog 20 1Chr09:41213588–41217191 (+)4.036e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.308e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.941e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.586e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)1.001e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)9.978e-13
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.399e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.181e-16
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.181e-16
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.181e-16
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.126e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)9.004e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.209e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.209e-11
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)3.926e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)3.199e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.467e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.206e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.92e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.315e-12
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.988e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.828e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.534e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.174e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.174e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.883e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.83e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.37e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.37e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.37e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.831e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.762e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.091e-12
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)7.469e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)7.469e-11
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)4.452e-11
Glyma.14G198800 hypothetical protein AT1G07030:AT1G07030:Mitochondrial substrate carrier family protein 1Chr14:46375963–46379746 (-)2.883e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.266e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)7.972e-12
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)2.157e-11
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)2.157e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.229e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.631e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.774e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.835e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)2.422e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)3.79e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.865e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)2.977e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)2.977e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)2.977e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.692e-15
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)7.502e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.758e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.459e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.765e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.491e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.46e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.998e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)9.018e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)5.064e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)1.873e-13
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)8.691e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.853e-12
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)8.272e-11
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)1.362e-12
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)1.362e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.198e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.097e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.097e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.508e-14
Glyma.20G098100 hypothetical protein AT1G56420:AT1G56420:antigenic heat-stable protein 1Chr20:34134555–34139100 (-)2.156e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)9.805e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.679e-11