Overview Annotation GWAS Evidence Associated genes

P03962

Metabolite ID
P03962
Deionized mass
403.1426 Da
Average m/z
404.1512
Average RT
7.9139
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
144
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

144 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)1.017e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)7.799e-16
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)3.389e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.644e-12
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)5.558e-16
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)3.168e-14
Glyma.04G086600 hypothetical protein NA 2Chr04:7374806–7380808 (+)7.069e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)3.911e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.915e-12
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 2Chr07:15404178–15410144 (-)7.996e-14
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)3.21e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.661e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.661e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.021e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.816e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)3.468e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.826e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)6.646e-18
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)3.587e-15
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)4.928e-22
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)4.928e-22
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 2Chr19:38632803–38635633 (+)2.48e-14
Glyma.19G128200 hypothetical protein NA 2Chr19:38739769–38743404 (+)3.27e-14
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)5.422e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.062e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.278e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.791e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.48e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.724e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.724e-13
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)2.191e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.836e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)1.607e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)9.322e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.181e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.849e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.65e-17
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.889e-14
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)1.188e-14
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)4.52e-11
Glyma.04G080000 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr04:6724579–6733710 (+)3.693e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.518e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.107e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.901e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.459e-15
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)4.68e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)3.502e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.041e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)7.545e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)7.448e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.645e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.645e-12
Glyma.06G309400 hypothetical protein AT5G07040:AT5G07040:RING/U-box superfamily protein 1Chr06:49792092–49792649 (+)7.373e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.325e-14
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)5.52e-13
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)5.515e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)7.133e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)7.133e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.655e-13
Glyma.07G129400 hypothetical protein AT3G02370:AT3G02370:tRNA-splicing endonuclease subunit__AT3G57360:AT3G57360:tRNA-splicing endonuclease subunit 1Chr07:15397826–15401368 (-)6.92e-11
Glyma.07G129700 hypothetical protein AT4G29680:AT4G29680:Alkaline-phosphatase-like family protein 1Chr07:15411976–15413873 (-)6.92e-11
Glyma.07G129900 hypothetical protein AT2G06925:PLA2-ALPHA:Phospholipase A2 family protein 1Chr07:15420011–15421954 (-)2.178e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)3.769e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)8.704e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)8.704e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.902e-12
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)1.34e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.984e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.885e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.791e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.353e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.293e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.293e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.555e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)5.054e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.092e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)6.977e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)6.785e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)6.508e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.433e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.433e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.433e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.433e-11
Glyma.11G171200 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18475119–18484515 (+)4.942e-11
Glyma.11G171500 hypothetical protein NA 1Chr11:18629660–18631015 (+)4.942e-11
Glyma.11G171800 hypothetical protein NA 1Chr11:18663180–18666591 (-)4.942e-11
Glyma.11G172200 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18702580–18708310 (+)4.942e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.699e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.727e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.727e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.162e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.162e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.133e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.133e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.013e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.155e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.155e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.014e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.015e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.661e-14
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.755e-13
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)2.089e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)7.744e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.299e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.355e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.084e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.816e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.321e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.275e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.321e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.321e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.725e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.264e-14
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)2.15e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.324e-13
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.925e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.925e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.412e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.877e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)1.12e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.375e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)9.383e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.57e-13
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)9.484e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)7.145e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.102e-15
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.905e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.168e-14
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.111e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.586e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.586e-11
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)1.479e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)9.034e-11
Glyma.18G045500 hypothetical protein NA 1Chr18:3942686–3943765 (-)1.213e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.548e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.646e-18
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)8.306e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)8.306e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)8.306e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)7.374e-14
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)1.342e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.383e-12
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)5.236e-12
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)5.422e-12