Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03884

Metabolite ID
P03884
Deionized mass
326.1201 Da
Average m/z
327.1263
Average RT
7.8877
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)5.507e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.583e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)7.28e-17
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)3.381e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)9.019e-11
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)1.708e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 2Chr05:41022747–41030067 (-)1.881e-15
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)7.211e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.385e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)4.739e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.723e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.612e-14
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)6.725e-11
Glyma.17G212100 hypothetical protein NA 2Chr17:35010757–35014587 (+)6.536e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)4.051e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.914e-13
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)1.536e-12
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)1.221e-11
Glyma.02G063200 hypothetical protein NA 1Chr02:5680261–5682907 (-)9.24e-11
Glyma.02G063800 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr02:5720590–5724380 (+)7.003e-11
Glyma.02G067600 hypothetical protein NA 1Chr02:5975111–5976381 (+)5.348e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.309e-13
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)1.663e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.497e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.41e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)3.27e-15
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.881e-15
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.881e-15
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.881e-15
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)1.464e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.566e-20
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.705e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.455e-15
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.106e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.106e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.106e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)4.071e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)4.071e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.503e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.503e-14
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.65e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.65e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.65e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.51e-15
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.306e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.306e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.236e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.758e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.758e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.067e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)7.132e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.441e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)1.119e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.702e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.702e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.593e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.593e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.732e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.158e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.832e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.832e-13
Glyma.12G212500 hypothetical protein NA 1Chr12:37150677–37158587 (+)9.493e-12
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)1.069e-13
Glyma.12G213100 hypothetical protein AT3G20560:PDIL5-3:PDI-like 5-3__AT4G27080:PDIL5-4:PDI-like 5-4 1Chr12:37207799–37215685 (+)9.493e-12
Glyma.12G213300 hypothetical protein AT4G27100:AT4G27100:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr12:37219675–37228348 (+)9.493e-12
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)1.409e-11
Glyma.12G236500 hypothetical protein NA 1Chr12:39528803–39534614 (-)3.94e-12
Glyma.13G055200 hypothetical protein AT3G02200:AT3G02200:Proteasome component (PCI) domain protein 1Chr13:15229290–15234025 (-)5.158e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.36e-12
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)9.324e-11
Glyma.13G224800 hypothetical protein NA 1Chr13:33748627–33756494 (-)9.324e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.993e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.612e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.098e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.583e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.018e-11
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)8.605e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.728e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.116e-13
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)1.13e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)1.304e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.46e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.735e-12
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)2.906e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.294e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.43e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.121e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.983e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.019e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.028e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.028e-13
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)9.455e-13
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)9.455e-13
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)9.455e-13
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)6.725e-11
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)6.725e-11
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)6.725e-11
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)6.725e-11
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)9.895e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)8.353e-14
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)8.285e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)1.514e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.807e-14
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)4.051e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)3.91e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)4.968e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.913e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.595e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.595e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.183e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)1.397e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.146e-14
Glyma.20G107000 hypothetical protein NA 1Chr20:34968161–34968457 (+)3.282e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.322e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)5.014e-12