Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03482

Metabolite ID
P03482
Deionized mass
188.0673 Da
Average m/z
189.0747
Average RT
7.6634
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.01e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)7.11e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.313e-11
Glyma.07G059300 hypothetical protein AT2G39780:RNS2:ribonuclease 2 2Chr07:5293201–5300088 (-)2.136e-11
Glyma.07G059400 hypothetical protein NA 2Chr07:5305964–5316002 (+)4.465e-14
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)2.227e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.25e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.25e-13
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)5.024e-11
Glyma.03G252800 hypothetical protein AT5G18430:AT5G18430:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr03:44849419–44851672 (+)7.85e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)7.45e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)9.188e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.091e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.033e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.01e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)3.14e-13
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.442e-13
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.442e-13
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.442e-13
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.442e-13
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)1.542e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.031e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.099e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.268e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)8.535e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)3.397e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.047e-12
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)7.895e-11
Glyma.07G059100 hypothetical protein NA 1Chr07:5282519–5283075 (-)5.235e-11
Glyma.07G059800 hypothetical protein AT3G25530:GLYR1:glyoxylate reductase 1 1Chr07:5326726–5333569 (+)8.015e-14
Glyma.07G059900 hypothetical protein AT3G25520:ATL5:ribosomal protein L5 1Chr07:5335302–5337999 (-)1.021e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.959e-12
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)2.092e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.319e-11
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)2.964e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.25e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.25e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.651e-13
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)2.725e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.056e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.028e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.856e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.028e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.028e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.02e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)7.411e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.728e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)7.11e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.935e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.313e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.313e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.313e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.313e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.789e-12
Glyma.16G160200 hypothetical protein NA 1Chr16:31969869–31972840 (+)7.45e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.055e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)9.613e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)9.613e-12
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)5.084e-11