Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02903

Metabolite ID
P02903
Deionized mass
353.1640 Da
Average m/z
354.1721
Average RT
6.0421
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.065e-13
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 3Chr14:46728613–46733836 (+)2.959e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)8.69e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)7.643e-12
Glyma.14G201900 hypothetical protein AT1G32210:ATDAD1:Defender against death (DAD family) protein__AT2G35520:DAD2:Defender against death (DAD family) protein 2Chr14:46736415–46739060 (-)1.82e-11
Glyma.14G202000 hypothetical protein NA 2Chr14:46741879–46743234 (-)2.332e-11
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)1.065e-13
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)2.969e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)4.431e-14
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)2.727e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.643e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.444e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.144e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.416e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.416e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.209e-11
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51042976–51045446 (-)2.994e-13
Glyma.07G079800 hypothetical protein NA 1Chr07:7259786–7263265 (+)2.334e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)7.773e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)9.208e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.982e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.659e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.659e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.659e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.659e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.827e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)3.017e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.323e-16
Glyma.14G202300 hypothetical protein NA 1Chr14:46754911–46760152 (-)2.332e-11
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)1.82e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.216e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.12e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)3.412e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.985e-12
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)2.263e-13
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)2.263e-13
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)2.263e-13
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)9.416e-14
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)6.804e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)4.151e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.763e-11
Glyma.17G113600 hypothetical protein AT5G20190:AT5G20190:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr17:8989211–8991547 (-)9.554e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.399e-13
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)8.69e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)7.24e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)7.24e-11