Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02901

Metabolite ID
P02901
Deionized mass
317.1041 Da
Average m/z
318.1089
Average RT
6.0329
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.315e-11
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)8.19e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.331e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 2Chr01:3821377–3825854 (-)8.19e-16
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)7.362e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.908e-12
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)1.361e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.315e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)7.429e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.374e-11
Glyma.01G034800 hypothetical protein NA 1Chr01:3605528–3607302 (-)2.677e-11
Glyma.01G036300 hypothetical protein NA 1Chr01:3813757–3814433 (+)1.397e-13
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.26e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.64e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.677e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.636e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.827e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.025e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.072e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.395e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.968e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.968e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)8.124e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.331e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.331e-11
Glyma.06G319500 hypothetical protein NA 1Chr06:50828930–50845232 (-)1.605e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.208e-11
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)9.907e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.939e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.098e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.973e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.458e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.458e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.458e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.458e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.789e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.894e-14
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.071e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.974e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.022e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.022e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.022e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.022e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.111e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.111e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.111e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.399e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.706e-14
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.103e-15
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.234e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.908e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)7.181e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.581e-17
Glyma.15G125700 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 1Chr15:9962401–9965136 (+)1.034e-13
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)1.853e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.338e-12
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)9.241e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.547e-11
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)3.568e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)3.568e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)7.51e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)7.51e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.645e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.645e-15
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.983e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.936e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)6.238e-11