Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02894

Metabolite ID
P02894
Deionized mass
440.1013 Da
Average m/z
441.1105
Average RT
6.0127
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.22e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.762e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.483e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)2.125e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)9.652e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)6.348e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.638e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)7.56e-12
Glyma.02G121500 hypothetical protein NA 1Chr02:12065640–12082937 (+)3.771e-11
Glyma.02G121600 hypothetical protein AT1G26310:CAL:K-box region and MADS-box transcription factor family protein 1Chr02:12084714–12089043 (+)3.771e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.08e-14
Glyma.03G006000 hypothetical protein AT1G08680:ZIGA4:ARF GAP-like zinc finger-containing protein ZIGA4 1Chr03:564616–574984 (+)3.907e-11
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)2.453e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)6.781e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.876e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.884e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.031e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.7e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)4.647e-11
Glyma.07G217800 hypothetical protein NA 1Chr07:39030630–39033705 (+)1.504e-12
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)3.89e-11
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)3.89e-11
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)3.89e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.808e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.503e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.107e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.658e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.658e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.658e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.658e-11
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)1.341e-16
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)1.341e-16
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)1.341e-16
Glyma.12G002400 hypothetical protein AT5G47850:CCR4:CRINKLY4 related 4 1Chr12:197288–200229 (+)8.254e-16
Glyma.12G003500 hypothetical protein AT5G61670:AT5G61670:orange protein 1Chr12:285588–289372 (-)1.642e-15
Glyma.12G003900 hypothetical protein AT5G51550:EXL3:EXORDIUM like 3 1Chr12:302437–304546 (+)1.173e-14
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.348e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.483e-12
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)5.386e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.513e-13
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.753e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.746e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.612e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.379e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.569e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.569e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.351e-13
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)9.716e-14
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)9.783e-11
Glyma.20G124000 hypothetical protein AT1G15130:AT1G15130:Endosomal targeting BRO1-like domain-containing protein 1Chr20:36650311–36658785 (+)9.455e-11