Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02676

Metabolite ID
P02676
Deionized mass
262.1869 Da
Average m/z
263.1946
Average RT
5.6209
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)6.662e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.145e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.572e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)7.218e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.807e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.297e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.432e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.393e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.39e-14
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.285e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)9.405e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.145e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.145e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)9.903e-13
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)9.117e-11
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)4.118e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)4.118e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.12e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.77e-12
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)7.984e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)9.1e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)6.291e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.786e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.711e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.711e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.005e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.808e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.218e-12
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)6.23e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.513e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.513e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.513e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.445e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.027e-16
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.592e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.342e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.353e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)6.663e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)8.441e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.566e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)7.279e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.563e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.803e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)7.218e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)6.475e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)7.218e-13
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)8.421e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.68e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.065e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.065e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6.158e-11