Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02277

Metabolite ID
P02277
Deionized mass
173.9815 Da
Average m/z
174.9892
Average RT
5.0542
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)3.643e-13
Glyma.20G071200 hypothetical protein NA 4Chr20:25316540–25366827 (+)5.665e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)9.063e-15
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.389e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.462e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.498e-13
Glyma.18G202600 FAD7-1 omega-3 fatty acid desaturase NA 2Chr18:48365045–48368299 (-)1.481e-12
Glyma.20G070800 VAD1 AT1G02120:VAD1:GRAM domain family protein 2Chr20:25156336–25176331 (-)5.665e-11
Glyma.20G084900 hypothetical protein NA 2Chr20:31707347–31709780 (-)5.665e-11
Glyma.01G014800 hypothetical protein NA 1Chr01:1459585–1464612 (+)1.363e-11
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)4.101e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.644e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.149e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.581e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)8.632e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.684e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.541e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.541e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.541e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.153e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.153e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)6.355e-12
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)6.355e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)6.297e-12
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)6.037e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)6.038e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)6.037e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)6.038e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)6.037e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)6.037e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)6.037e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)6.038e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)6.037e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)6.038e-11
Glyma.06G293700 hypothetical protein AT2G20740:AT2G20740:Tetraspanin family protein 1Chr06:48253149–48265560 (+)2.575e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)3.588e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.498e-13
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)4.887e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.937e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.855e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.309e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)8.446e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.178e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.063e-15
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)4.032e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)2.471e-12
Glyma.15G111200 hypothetical protein AT1G11950:AT1G11950:Transcription factor jumonji (jmjC) domain-containing protein 1Chr15:8705907–8710609 (-)3.982e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.642e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.574e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.839e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.171e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.99e-11
Glyma.17G219500 hypothetical protein NA 1Chr17:37109440–37111216 (-)1.655e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)4.144e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)4.369e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.959e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.959e-11
Glyma.20G070100 hypothetical protein NA 1Chr20:24897324–24898925 (-)5.665e-11
Glyma.20G071000 hypothetical protein NA 1Chr20:25298698–25300941 (+)5.665e-11
Glyma.20G074500 hypothetical protein AT2G38710:AT2G38710:AMMECR1 family 1Chr20:26796617–26809116 (-)5.665e-11
Glyma.20G074600 hypothetical protein NA 1Chr20:26803189–26805842 (+)5.665e-11
Glyma.20G076500 hypothetical protein AT1G04780:AT1G04780:Ankyrin repeat family protein 1Chr20:27700886–27708055 (+)5.665e-11
Glyma.20G083800 hypothetical protein NA 1Chr20:31482676–31483763 (-)5.665e-11
Glyma.20G083900 hypothetical protein NA 1Chr20:31503404–31505246 (-)5.665e-11
Glyma.20G084000 hypothetical protein AT4G30220:RUXF:small nuclear ribonucleoprotein F__AT2G14285:AT2G14285:Small nuclear ribonucleoprotein family protein 1Chr20:31536334–31538924 (+)5.665e-11
Glyma.20G084500 hypothetical protein AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A 1Chr20:31666190–31674959 (-)5.665e-11
Glyma.20G084700 hypothetical protein NA 1Chr20:31686813–31687483 (-)5.665e-11
Glyma.20G085000 hypothetical protein NA 1Chr20:31745486–31748473 (-)5.665e-11
Glyma.20G085300 hypothetical protein AT2G33360:AT2G33360:cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) 1Chr20:31823173–31827117 (+)5.665e-11
Glyma.20G085400 hypothetical protein NA 1Chr20:31828204–31832688 (+)5.665e-11